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Comment: Comment: Reformatting Merged and Unmerged Paired-End Files
11 weeks ago by young_bioinformatician ▴ 230
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Reformatting Merged and Unmerged Paired-End Files
illumina fastp fastqc bbmap
updated 11 weeks ago by 142k • written 11 weeks ago by ▴ 230
5
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5
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1.3k
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long view SNPs in vcf file
bcftools Variant-Calling SNP freebayes vcftools
updated 12 weeks ago by ▴ 10 • written 18 months ago by ▴ 230
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464
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Comment: Comment: Guided genome assembly
3 months ago by young_bioinformatician ▴ 230
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484
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Comment: Comment: eggNOG versus Diamond blastp
3 months ago by young_bioinformatician ▴ 230
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Answer: Answer: Multimapped and unique mapped for BAM file of RRBS data
3 months ago by young_bioinformatician ▴ 230
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3
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484
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eggNOG versus Diamond blastp
diamond eggNOG protein functional
updated 3 months ago by ★ 2.5k • written 3 months ago by ▴ 230
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2
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633
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How to manage GO terms for metagenomics
metagenome gene-ontology GO
updated 3 months ago by ▴ 410 • written 19 months ago by ▴ 230
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1
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334
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Answer: Answer: move fasta and fastq files with the same name folder
3 months ago by young_bioinformatician ▴ 230
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991
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Answer: Answer: How to produce "publication quality figures" for MAGs from environmental samples
4 months ago by young_bioinformatician ▴ 230
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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23
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1.6k
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How to speed Salmon index up
metagenome genome salmon
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Answer: Answer: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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2
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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1
reply
1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
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0
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1.6k
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Comment: Comment: How to speed Salmon index up
4 months ago by young_bioinformatician ▴ 230
1
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2
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489
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Answer: Answer: Transcript Based Annotation of Variants Using Annovar
4 months ago by young_bioinformatician ▴ 230
2
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1
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944
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Answer: Answer: How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
13 months ago by young_bioinformatician ▴ 230
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0
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349
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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
15 months ago by young_bioinformatician ▴ 230
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1
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848
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Comment: Comment: Further Reducing Gene Ontology list
18 months ago by young_bioinformatician ▴ 230
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1.2k
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Comment: Comment: How to combine eggnog and interproscan
18 months ago by young_bioinformatician ▴ 230
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2
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1.2k
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
18 months ago by young_bioinformatician ▴ 230
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0
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3.6k
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Comment: Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
18 months ago by young_bioinformatician ▴ 230
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0
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1.3k
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Comment: Comment: long view SNPs in vcf file
18 months ago by young_bioinformatician ▴ 230
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1.3k
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Comment: Comment: long view SNPs in vcf file
18 months ago by young_bioinformatician ▴ 230
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0
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666
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Comment: Comment: Change ploidy level in vcf file
updated 19 months ago by 2.8k • written 19 months ago by ▴ 230
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2
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666
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 19 months ago by 2.8k • written 19 months ago by ▴ 230
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2.1k
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Comment: Comment: How to create a basic GUI for rna seq pipeline
19 months ago by young_bioinformatician ▴ 230
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1
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1.6k
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Comment: Comment: Fasta headers column spilt or selection
20 months ago by young_bioinformatician ▴ 230
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0
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674
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Comment: Comment: variant analysis using Freebayes
20 months ago by young_bioinformatician ▴ 230
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846
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Comment: Comment: Error loading a bam + bai files in IGV
20 months ago by young_bioinformatician ▴ 230
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0
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942
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Comment: Comment: When to use Genome assembly and when to use short read alignment for consensus g
20 months ago by young_bioinformatician ▴ 230
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2.0k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by young_bioinformatician ▴ 230
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1
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2.0k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by young_bioinformatician ▴ 230
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1
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2.0k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by young_bioinformatician ▴ 230
3
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6
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2.0k
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PLINK - individual variance with the SNPs weights
plink snp variant population pca
20 months ago by young_bioinformatician ▴ 230
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1
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878
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Comment: Comment: Normalization after Trimmomatic ?
23 months ago by young_bioinformatician ▴ 230
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0
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378
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How to (or not to) interpret the annotation abundance result from metagenome
gene abundance GO annotation metagenome
23 months ago by young_bioinformatician ▴ 230
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0
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1.2k
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Answer: Answer: MG RAST for Eukaryota
2.0 years ago by young_bioinformatician ▴ 230
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0
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726
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Comment: Comment: Considering two and more variation in polyploidy
2.1 years ago by young_bioinformatician ▴ 230
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1
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726
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Comment: Comment: Considering two and more variation in polyploidy
2.1 years ago by young_bioinformatician ▴ 230
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4
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726
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Considering two and more variation in polyploidy
Population SNP Variant genomic Calling
2.1 years ago by young_bioinformatician ▴ 230
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734
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Comment: Comment: PCA biplot for SNPs data
2.2 years ago by young_bioinformatician ▴ 230
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2
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734
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PCA biplot for SNPs data
SNP Calling PCA Variant
2.2 years ago by young_bioinformatician ▴ 230
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0
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902
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Comment: C: IDBA-UD Output Question
3.8 years ago by young_bioinformatician ▴ 230
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