Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
1.5k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
20 months ago by Shred ★ 1.4k
2
votes
0
replies
1.4k
views
Answer: Answer: Get both somatic and germline mutations from tumor only sample?
21 months ago by Shred ★ 1.4k
1
vote
1
reply
645
views
Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
21 months ago by Shred ★ 1.4k
3
votes
1
reply
1.2k
views
Comment: Comment: Variant identified, What next?
21 months ago by Shred ★ 1.4k
2
votes
0
replies
782
views
Answer: Answer: How to create a fasta file using a list of DNA sequences data
22 months ago by Shred ★ 1.4k
1
vote
1
reply
1.0k
views
Comment: Comment: Reading in input file into a Snakemake pipeline
22 months ago by Shred ★ 1.4k
3
votes
1
reply
1.0k
views
Answer: Answer: Reading in input file into a Snakemake pipeline
22 months ago by Shred ★ 1.4k
0
votes
0
replies
1.3k
views
Comment: Comment: Cannot call haplotypes on bam
22 months ago by Shred ★ 1.4k
2
votes
1
reply
758
views
Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
22 months ago by Shred ★ 1.4k
0
votes
1
reply
1.3k
views
Comment: Comment: Cannot call haplotypes on bam
22 months ago by Shred ★ 1.4k
0
votes
1
reply
1.3k
views
Comment: Comment: Cannot call haplotypes on bam
22 months ago by Shred ★ 1.4k
1
vote
1
reply
971
views
Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
22 months ago by Shred ★ 1.4k
1
vote
2
replies
971
views
Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
22 months ago by Shred ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: Comment: Increased GC content after trimming RNAseq data
22 months ago by Shred ★ 1.4k
3
votes
0
replies
831
views
Answer: Answer: Figuring out if a gene exists in a genome
22 months ago by Shred ★ 1.4k
2
votes
1
reply
843
views
Answer: Answer: Python pandas transforming int to float in gff subsetting
23 months ago by Shred ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: How to count the number of multimapped reads from a bam file?
23 months ago by Shred ★ 1.4k
0
votes
0
replies
476
views
Comment: Comment: Wildcards Snakemake using bedtools
23 months ago by Shred ★ 1.4k
1
vote
1
reply
1.5k
views
Comment: Comment: Running salmon in alignment mode?
24 months ago by Shred ★ 1.4k
0
votes
1
reply
755
views
Comment: Comment: How to make predictions on genes not involved in a particular disease
24 months ago by Shred ★ 1.4k
0
votes
0
replies
753
views
Comment: Comment: Which statistical test should be used for comparison of a single gene expression
2.0 years ago by Shred ★ 1.4k
0
votes
0
replies
1.4k
views
Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
2.0 years ago by Shred ★ 1.4k
0
votes
0
replies
786
views
Comment: Comment: WGCNA functions not found
2.0 years ago by Shred ★ 1.4k
1
vote
1
reply
1.6k
views
Comment: Comment: For loop in R
2.1 years ago by Shred ★ 1.4k
0
votes
0
replies
884
views
Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.1 years ago by Shred ★ 1.4k
0
votes
1
reply
884
views
Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
2.1 years ago by Shred ★ 1.4k
2
votes
1
reply
1.6k
views
Answer: Answer: snakemake workflow
2.1 years ago by Shred ★ 1.4k
2
votes
0
replies
670
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
2.1 years ago by Shred ★ 1.4k
0
votes
0
replies
1.3k
views
Comment: Comment: Best transcriptome assembler
2.2 years ago by Shred ★ 1.4k
1
vote
1
reply
1.3k
views
Answer: Answer: Best transcriptome assembler
2.2 years ago by Shred ★ 1.4k
0
votes
1
reply
1.3k
views
Comment: Comment: Best transcriptome assembler
2.2 years ago by Shred ★ 1.4k
1
vote
0
replies
3.1k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
2.2 years ago by Shred ★ 1.4k
1
vote
1
reply
2.6k
views
Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
2.2 years ago by Shred ★ 1.4k
1
vote
1
reply
863
views
Comment: Comment: lncRNA analysis
2.2 years ago by Shred ★ 1.4k
0
votes
0
replies
569
views
Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
2.2 years ago by Shred ★ 1.4k
0
votes
0
replies
702
views
Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
2.3 years ago by Shred ★ 1.4k
1
vote
0
replies
948
views
Answer: Answer: How to change gene coordinate in gtf file?
2.3 years ago by Shred ★ 1.4k
1
vote
0
replies
733
views
Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.3 years ago by Shred ★ 1.4k
0
votes
0
replies
2.1k
views
Comment: Comment: featureCounts parameters
2.3 years ago by Shred ★ 1.4k
0
votes
0
replies
2.1k
views
Comment: Comment: featureCounts parameters
2.3 years ago by Shred ★ 1.4k
1
vote
0
replies
3.8k
views
Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
2.3 years ago by Shred ★ 1.4k
0
votes
1
reply
2.1k
views
Comment: Comment: featureCounts parameters
2.3 years ago by Shred ★ 1.4k
0
votes
2
replies
2.1k
views
Comment: Comment: featureCounts parameters
2.3 years ago by Shred ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: How can I bring similar columns from two different tables side by side?
2.3 years ago by Shred ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
2.3 years ago by Shred ★ 1.4k
1
vote
1
reply
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Shred ★ 1.4k
1
vote
1
reply
4.4k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Shred ★ 1.4k
1
vote
0
replies
4.4k
views
Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Shred ★ 1.4k
0
votes
0
replies
1.7k
views
Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
2.3 years ago by Shred ★ 1.4k
1
vote
1
reply
583
views
Answer: Answer: Extracting the mapped sequence of a certian gene
2.3 years ago by Shred ★ 1.4k
243 results • Page 3 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6