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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
10 months ago by acvill ▴ 340
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632
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Answer: Answer: Find a known motif in new sequences
10 months ago by acvill ▴ 340
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688
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Answer: Answer: Is there a way to prove that two VCFs came from the same person?
10 months ago by acvill ▴ 340
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612
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Answer: Answer: prevalence and detection threshold of core microbiome
10 months ago by acvill ▴ 340
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810
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Comment: Comment: phage genome submission in ncbi genebank
11 months ago by acvill ▴ 340
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572
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Answer: Answer: Peaks annotation on bacterial genome
12 months ago by acvill ▴ 340
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2
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What is the NCBI's definition of an "atypical genome"?
NCBI genome annotation
updated 13 months ago by ▴ 720 • written 13 months ago by ▴ 340
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Comment: Comment: SKAT in R
14 months ago by acvill ▴ 340
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1.3k
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Comment: Comment: implementation of k-mer counting from krakenuniq to kraken2
14 months ago by acvill ▴ 340
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651
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Answer: Answer: qtl, eqtl, sqtl
16 months ago by acvill ▴ 340
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683
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Answer: Answer: Is there a R equivalent of ete3 reconcile?
16 months ago by acvill ▴ 340
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1.6k
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Answer: Answer: R is assigning unique identifier to the same column names when reading in as a d
16 months ago by acvill ▴ 340
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672
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Answer: Answer: Why some reads have MAPQ = 0 with bwa and look good?
17 months ago by acvill ▴ 340
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1.7k
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Comment: Comment: GO and KEGG enrichment analysis for non-model organism
17 months ago by acvill ▴ 340
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2
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815
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Comment: Comment: Assigning an name based on matching three possible cells/columns
18 months ago by acvill ▴ 340
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970
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Comment: Comment: Remove rRNA for RNA-Seq Analysis
18 months ago by acvill ▴ 340
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Comment: Comment: downloading genomes in fasta format from accession ids
18 months ago by acvill ▴ 340
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1.1k
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Answer: Answer: Filtering a fasta file based on blast results file
19 months ago by acvill ▴ 340
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489
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Answer: Answer: Why 6mA data are always 41 bps long?
19 months ago by acvill ▴ 340
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616
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Answer: Answer: R programming
20 months ago by acvill ▴ 340
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681
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Comment: Comment: working piRNA prediction tools
20 months ago by acvill ▴ 340
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954
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Comment: Comment: How to split two rows in multiples row in R
20 months ago by acvill ▴ 340
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700
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Where to find an asymmetric nucleotide substitution matrix with IUPAC encoding?
Bioconductor tidyverse sequence-alignment R Biostrings
21 months ago by acvill ▴ 340
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700
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Answer: Answer: Where to find an asymmetric nucleotide substitution matrix with IUPAC encoding?
21 months ago by acvill ▴ 340
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834
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Comment: Comment: Duplication genes in Mitochondrial genome ?
22 months ago by acvill ▴ 340
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Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
23 months ago by acvill ▴ 340
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970
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Comment: Comment: Bulk RNA-seq with genome but without gene annotation
23 months ago by acvill ▴ 340
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845
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Answer: Answer: why bowtie2 doesn’t report longer than 500bp inserts?
23 months ago by acvill ▴ 340
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821
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Comment: Comment: conditional count of occurrence in R
2.0 years ago by acvill ▴ 340
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1
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821
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Answer: Answer: conditional count of occurrence in R
2.1 years ago by acvill ▴ 340
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21k
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Comment: Comment: how to rearrange fasta file according to its length
2.2 years ago by acvill ▴ 340
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428
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Comment: Comment: metagenomics analysis
2.2 years ago by acvill ▴ 340
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1.5k
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Answer: Answer: MetaPhlAn Visualization using stacked barplot
2.3 years ago by acvill ▴ 340
2
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1
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947
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Answer: Answer: Difference between LIGR-seq and PARIS methods
2.3 years ago by acvill ▴ 340
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39k
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Comment: Comment: Transform a GTF file into a data frame in R
2.5 years ago by acvill ▴ 340
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1
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39k
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Answer: Answer: Transform a GTF file into a data frame in R
2.5 years ago by acvill ▴ 340
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2.4k
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Comment: Comment: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
2.6 years ago by acvill ▴ 340
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3
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2.4k
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Count strand-specific 5' / 3' coverage across whole genome for paired-end fragments
bedtools RNA-seq bam strand-specific
2.6 years ago by acvill ▴ 340
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2.4k
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Answer: Answer: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
2.6 years ago by acvill ▴ 340
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