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lechu
lechu
Reputation:
20
Joined:
9.0 years ago
Last seen:
4.5 years ago
Location:
Sweden
Latest posts by user
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Comment: Comment: Error correction based on PCR duplicates using clumpify.sh
written by lechu • lechu
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2 replies
1.5K views
Error correction based on PCR duplicates using clumpify.sh
rnaseq bbmap duplicates clumpify
written by lechu • lechu
0 votes
1 reply
940 views
Clipping bases from non-overlapping regions of mate reads in BAM file
rnaseq
updated by Pierre Lindenbaum Pierre Lindenbaum • written by lechu • lechu
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0 replies
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Comment: C: Soft-clipping of a BAM file based on regions from the BED file
written by lechu • lechu
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1 reply
0 views
Comment: C: Soft-clipping of a BAM file based on regions from the BED file
written by lechu • lechu
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0 replies
0 views
Comment: C: clipOverlap from BamUtil modifies CIGAR string => error in GATK
written by lechu • lechu
0 votes
5 replies
3.7K views
Soft-clipping of a BAM file based on regions from the BED file
rna-seq
updated by Pierre Lindenbaum Pierre Lindenbaum • written by lechu • lechu
0 votes
1 reply
0 views
Answer: A: clipOverlap from BamUtil modifies CIGAR string => error in GATK
written by lechu • lechu
0 votes
1 reply
0 views
Comment: C: Annotating reads with the name of the feature to which they map
written by lechu • lechu
0 votes
0 replies
1.0K views
Adding information tags with types, positions and counts of matches and mismatches in every read in the SAM file
rna-seq
written by lechu • lechu
0 votes
1 reply
0 views
Comment: C: Annotating reads with the name of the feature to which they map
written by lechu • lechu
0 votes
0 replies
680 views
How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
rna-seq
written by lechu • lechu
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5 replies
2.1K views
Annotating reads with the name of the feature to which they map
rna-seq
updated by A. Domingues A. Domingues • written by lechu • lechu
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874 views
Mapping long RNAseq reads to genome with nextGenMap - how to adjust parameters?
rna-seq
written by lechu • lechu
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0 replies
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Comment: C: How to modify a BAM file to avoid double-counting of variants from overlapping P
written by lechu • lechu
0 votes
1 reply
0 views
Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
written by lechu • lechu
0 votes
1 reply
0 views
Comment: A: How to modify a BAM file to avoid double-counting of variants from overlapping P
written by lechu • lechu
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0 replies
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Comment: C: Merging overlapping mates in a BAM / SAM file into one read
written by lechu • lechu
1 vote
1 reply
0 views
Comment: A: Tools to merge overlapping paired-end reads
written by lechu • lechu
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0 replies
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Comment: C: combining / merging overlapping reads in bam file to one in silico long read
written by lechu • lechu
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