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Comment: Comment: ROSE called super-enhancers overlapping with promoters
4 months ago by jared.andrews07 ★ 17k
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2.0k
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Comment: Comment: Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mar
4 months ago by jared.andrews07 ★ 17k
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Comment: Comment: Bio-informatics Scientist at BASF | Nunhems (Near Eindhoven, The Netherlands)
4 months ago by jared.andrews07 ★ 17k
1
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0
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601
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Comment: Comment: batch effect correction in 10x genomics single cell sequencing
4 months ago by jared.andrews07 ★ 17k
1
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2
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671
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Answer: Answer: ROSE called super-enhancers overlapping with promoters
4 months ago by jared.andrews07 ★ 17k
1
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1
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2.0k
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Comment: Comment: Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mar
4 months ago by jared.andrews07 ★ 17k
2
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0
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418
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Comment: Comment: best pipeline for Paired scATAC-seq and scRNA-seq in the same cell - bioinformat
4 months ago by jared.andrews07 ★ 17k
1
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1
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731
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Comment: Comment: No tumour cells in clustering of tumor sample?!
4 months ago by jared.andrews07 ★ 17k
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1
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731
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Comment: Comment: No tumour cells in clustering of tumor sample?!
4 months ago by jared.andrews07 ★ 17k
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667
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Comment: Comment: Bulk RNA-seq: Different Expression Analysis with DEseq2
4 months ago by jared.andrews07 ★ 17k
2
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1
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731
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Answer: Answer: No tumour cells in clustering of tumor sample?!
4 months ago by jared.andrews07 ★ 17k
2
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2
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681
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Answer: Answer: Seurat Analysis: Deleting cells from seurat object
4 months ago by jared.andrews07 ★ 17k
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1
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11k
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Comment: Comment: For CreateSeuratObject, Where Do the Values for min.cells and min.features come
4 months ago by jared.andrews07 ★ 17k
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1
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811
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by jared.andrews07 ★ 17k
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1.0k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
5 months ago by jared.andrews07 ★ 17k
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1
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1.0k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
5 months ago by jared.andrews07 ★ 17k
1
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1
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1.0k
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
5 months ago by jared.andrews07 ★ 17k
2
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1
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1.1k
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Answer: Answer: RNA Contamination Tool for Developing Cell Samples
5 months ago by jared.andrews07 ★ 17k
1
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1
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1.0k
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Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
5 months ago by jared.andrews07 ★ 17k
0
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0
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510
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Comment: Comment: Single cell visulaisation webtool
5 months ago by jared.andrews07 ★ 17k
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580
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Comment: Comment: R ComplexHeatmap - Adujusting the cell size in heatmap
5 months ago by jared.andrews07 ★ 17k
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0
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610
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Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
5 months ago by jared.andrews07 ★ 17k
4
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1
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643
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Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
5 months ago by jared.andrews07 ★ 17k
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0
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532
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Answer: Answer: RNA-seq log2 fold change to linear
5 months ago by jared.andrews07 ★ 17k
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0
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1.6k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
5 months ago by jared.andrews07 ★ 17k
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418
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Answer: Answer: What type of cancer did they study in this paper?
5 months ago by jared.andrews07 ★ 17k
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0
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770
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
6 months ago by jared.andrews07 ★ 17k
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0
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770
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
6 months ago by jared.andrews07 ★ 17k
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4
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770
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind csaw normalization spikein ChIPseq
6 months ago by jared.andrews07 ★ 17k
1
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1
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867
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Answer: Answer: Doheatmap in seurat
7 months ago by jared.andrews07 ★ 17k
2
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1
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476
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Answer: Answer: DepMap Portal
7 months ago by jared.andrews07 ★ 17k
1
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1
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1.1k
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Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
7 months ago by jared.andrews07 ★ 17k
0
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0
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665
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Comment: Comment: macs2 output r file not generated
7 months ago by jared.andrews07 ★ 17k
2
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1
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665
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Answer: Answer: macs2 output r file not generated
7 months ago by jared.andrews07 ★ 17k
0
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0
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557
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Answer: Answer: Visium data analysis software supporting deconvolution analysis
7 months ago by jared.andrews07 ★ 17k
0
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0
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389
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Comment: Comment: I'm doing RNA seq but the quality control sequence GC contens shape looks weird.
7 months ago by jared.andrews07 ★ 17k
3
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1
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1.5k
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Answer: Answer: Mentor for a beginner bioinformatics student
7 months ago by jared.andrews07 ★ 17k
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0
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642
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Comment: Comment: 2 dimensional quadrant plot
7 months ago by jared.andrews07 ★ 17k
0
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1
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1.9k
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Comment: Comment: ROSE Algorithm: index out of range
7 months ago by jared.andrews07 ★ 17k
1
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0
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6.2k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by jared.andrews07 ★ 17k
1
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1
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6.2k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by jared.andrews07 ★ 17k
0
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0
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6.2k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by jared.andrews07 ★ 17k
1
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0
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674
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Comment: Comment: Chip-Seq and correlation of bam file
8 months ago by jared.andrews07 ★ 17k
2
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1
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674
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Answer: Answer: Chip-Seq and correlation of bam file
8 months ago by jared.andrews07 ★ 17k
1
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0
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398
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Answer: Answer: Transcription factor co-localization p-values
8 months ago by jared.andrews07 ★ 17k
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0
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961
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Comment: Comment: Filter human transcription factors
8 months ago by jared.andrews07 ★ 17k
6
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3
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961
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Answer: Answer: Filter transcription factors
8 months ago by jared.andrews07 ★ 17k
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0
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1.5k
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Comment: Comment: scRNAseq Differential expression analysis
8 months ago by jared.andrews07 ★ 17k
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1
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655
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Answer: Answer: GSEA Result Visualization in R
8 months ago by jared.andrews07 ★ 17k
9
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1
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3.6k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
8 months ago by jared.andrews07 ★ 17k
1,468 results • Page 2 of 30
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