Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
1
reply
760
views
Answer: Answer: Load MF, CC and BP from org.Hs.eg.db
updated 8 months ago by 43k • written 8 months ago by ★ 16k
1
vote
0
replies
838
views
Answer: Answer: How to loop over certain files within a directory that belongs to certain sample
9 months ago by jared.andrews07 ★ 16k
3
votes
3
replies
2.4k
views
Answer: Answer: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
9 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
467
views
Answer: Answer: About batch effect in separate library preparation for multiple samples tested o
9 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
528
views
Answer: Answer: Bioinformatics Workflow
9 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
883
views
Answer: Answer: Choosing a cut-off for mitochondrial genes in brain scRNAseq
9 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
718
views
Answer: Answer: circular heatmap in R Shiny
updated 9 months ago by 43k • written 9 months ago by ★ 16k
1
vote
0
replies
667
views
Answer: Answer: Cell Barcode Identification and Counting
updated 9 months ago by 43k • written 9 months ago by ★ 16k
0
votes
1
reply
999
views
Answer: Answer: CNA score calculation per cell
9 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
950
views
Answer: Answer: How to get a list of gene names from macs2 peaks
9 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
694
views
Answer: Answer: identify cell of origin from bulk RNAseq data
9 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
623
views
Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
9 months ago by jared.andrews07 ★ 16k
0
votes
1
reply
1.2k
views
Answer: Answer: gseGO() --> No gene can be mapped
9 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
1.4k
views
Answer: Answer: How to write a review article in bioinformatics
9 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
505
views
Answer: Answer: Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
9 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
356
views
Answer: Answer: Gene signature into scoring method
9 months ago by jared.andrews07 ★ 16k
0
votes
2
replies
1.9k
views
Answer: Answer: Typical Volcano Plot for DGE
9 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
668
views
Answer: Answer: Integrate transcriptomics and CNV
9 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
5.2k
views
Answer: Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by jared.andrews07 ★ 16k
2
votes
2
replies
1.4k
views
Answer: Answer: Heatmap for ATAC-seq
9 months ago by jared.andrews07 ★ 16k
4
votes
1
reply
2.6k
views
Answer: Answer: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
10 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
1.6k
views
Answer: Answer: Leiden algorithm not working R studio scRNAseq
10 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
569
views
Answer: Answer: Peak calling a general bed file (not reads)
11 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
1.7k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
12 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
675
views
Answer: Answer: Does ROSE include traditional enhancer in the analysis output?
12 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
1.6k
views
Answer: Answer: How can I make all my PCA plots the same shape using ggplots?
13 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
797
views
Answer: Answer: Why can’t we have full-length transcripts with droplet-based technologies ?
13 months ago by jared.andrews07 ★ 16k
1
vote
1
reply
1.4k
views
Answer: Answer: ExomeDepth installation error
14 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
679
views
Answer: Answer: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15t
14 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
584
views
Answer: Answer: If using singeR return more clusters than available ones should I do reclusterin
14 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
521
views
Answer: Answer: How to quantify the reads of each peak for ChIP-seq data?
14 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
681
views
Answer: Answer: How to quantify the reads of peaks?
14 months ago by jared.andrews07 ★ 16k
3
votes
0
replies
932
views
Answer: Answer: Can FPKM data sets be of any use or are they trash?
15 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
1.2k
views
Answer: Answer: Use single cell sequencing bam file to tell if a patient has a mutation
15 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
450
views
Answer: Answer: Pearson correlation coefficients of histone modifications at specific region
15 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
1.0k
views
Answer: Answer: singleR annotation shows overlapping clusters
15 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
532
views
Answer: Answer: Normalizing chip-seq signals with different number of peaks
15 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
1.1k
views
Answer: Answer: extracting input files form Seurat
15 months ago by jared.andrews07 ★ 16k
3
votes
0
replies
571
views
Answer: Answer: Do I need to correct for sequencing depth in bulk RNA seq?
15 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
1.0k
views
Answer: Answer: Processed RNA seq data publicly available
16 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
912
views
Answer: Answer: What is the best way to convert gene symbols into ensembl and other ids in Pytho
16 months ago by jared.andrews07 ★ 16k
2
votes
1
reply
1.5k
views
Answer: Answer: How do I subset data in R with a list of variable names?
16 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
497
views
Answer: Answer: General questions concerning mathylation analysis
17 months ago by jared.andrews07 ★ 16k
1
vote
2
replies
3.6k
views
Answer: Answer: CUT&Tag data processing: peak caller choice and typical peak size profile
17 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
645
views
Answer: Answer: Analyzing time-series RNA-seq data using DEseq2
17 months ago by jared.andrews07 ★ 16k
2
votes
2
replies
1.3k
views
Answer: Answer: How to interpret the nine-square plot from mageckFlute
17 months ago by jared.andrews07 ★ 16k
2
votes
0
replies
647
views
Answer: Answer: ENCODE peaks files - do I use the IDR files?
18 months ago by jared.andrews07 ★ 16k
0
votes
0
replies
1.5k
views
Answer: Answer: EdgeR installation in Mac 1 Pro (M1 chip) using Studio
18 months ago by jared.andrews07 ★ 16k
3
votes
1
reply
1.1k
views
Answer: Answer: Subsetting DGEList object for for a list of genes of interest
18 months ago by jared.andrews07 ★ 16k
3
votes
0
replies
2.8k
views
Answer: Answer: How to resolve conda package conflicts when I try to build an environment for NL
18 months ago by jared.andrews07 ★ 16k
605 results • Page 2 of 13
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6