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Answer: Answer: DiffBind: no peaks in DBA
2 days ago by jared.andrews07 ★ 16k
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165
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Answer: Answer: Super ehancers
3 days ago by jared.andrews07 ★ 16k
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311
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Answer: Answer: What purposes can TPM values be used for?
3 days ago by jared.andrews07 ★ 16k
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340
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Answer: Answer: Visualize pathways from MSigDB
29 days ago by jared.andrews07 ★ 16k
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248
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Answer: Answer: Update R in Posit Workbench
5 weeks ago by jared.andrews07 ★ 16k
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212
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Answer: Answer: Seeking for edgeR TMM Normalization calcul example
6 weeks ago by jared.andrews07 ★ 16k
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481
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Answer: Answer: Error when trying to install R package 'scater'
6 weeks ago by jared.andrews07 ★ 16k
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219
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Answer: Answer: Seurat 5 integration
6 weeks ago by jared.andrews07 ★ 16k
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1
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724
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Answer: Answer: Bioinformatics career transition
7 weeks ago by jared.andrews07 ★ 16k
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255
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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
7 weeks ago by jared.andrews07 ★ 16k
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340
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Answer: Answer: quality control scRNAseq
7 weeks ago by jared.andrews07 ★ 16k
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379
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Answer: Answer: Demonstrating lack of difference between two peaksets
7 weeks ago by jared.andrews07 ★ 16k
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284
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Answer: Answer: Huge TPM values in some tissues of an expression atlas
9 weeks ago by jared.andrews07 ★ 16k
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0
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395
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Answer: Answer: PCA plot analysis
9 weeks ago by jared.andrews07 ★ 16k
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1
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236
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Answer: Answer: Sample clustering from 10X single cell
10 weeks ago by jared.andrews07 ★ 16k
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369
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Answer: Answer: How to add motifs in cellranger-arc reference?
10 weeks ago by jared.andrews07 ★ 16k
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266
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Answer: Answer: Pseudo bulking of scATAC-seq
11 weeks ago by jared.andrews07 ★ 16k
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2
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593
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Answer: Answer: ROSE called super-enhancers overlapping with promoters
3 months ago by jared.andrews07 ★ 16k
2
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1
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691
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Answer: Answer: No tumour cells in clustering of tumor sample?!
3 months ago by jared.andrews07 ★ 16k
2
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2
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636
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Answer: Answer: Seurat Analysis: Deleting cells from seurat object
3 months ago by jared.andrews07 ★ 16k
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1
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1.0k
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Answer: Answer: RNA Contamination Tool for Developing Cell Samples
4 months ago by jared.andrews07 ★ 16k
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1
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949
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Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
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573
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Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
4 months ago by jared.andrews07 ★ 16k
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1
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597
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Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
5 months ago by jared.andrews07 ★ 16k
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0
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516
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Answer: Answer: RNA-seq log2 fold change to linear
5 months ago by jared.andrews07 ★ 16k
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391
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Answer: Answer: What type of cancer did they study in this paper?
5 months ago by jared.andrews07 ★ 16k
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1
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821
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Answer: Answer: Doheatmap in seurat
6 months ago by jared.andrews07 ★ 16k
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1
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446
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Answer: Answer: DepMap Portal
6 months ago by jared.andrews07 ★ 16k
1
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1
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965
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Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
6 months ago by jared.andrews07 ★ 16k
2
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1
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630
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Answer: Answer: macs2 output r file not generated
6 months ago by jared.andrews07 ★ 16k
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0
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526
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Answer: Answer: Visium data analysis software supporting deconvolution analysis
6 months ago by jared.andrews07 ★ 16k
3
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1.4k
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Answer: Answer: Mentor for a beginner bioinformatics student
6 months ago by jared.andrews07 ★ 16k
2
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1
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658
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Answer: Answer: Chip-Seq and correlation of bam file
7 months ago by jared.andrews07 ★ 16k
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0
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381
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Answer: Answer: Transcription factor co-localization p-values
7 months ago by jared.andrews07 ★ 16k
6
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3
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933
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Answer: Answer: Filter transcription factors
7 months ago by jared.andrews07 ★ 16k
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1
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601
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Answer: Answer: GSEA Result Visualization in R
7 months ago by jared.andrews07 ★ 16k
1
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0
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815
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Answer: Answer: trajectory-like graph for a data frame
7 months ago by jared.andrews07 ★ 16k
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1
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754
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Answer: Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
8 months ago by jared.andrews07 ★ 16k
3
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1
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1.2k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
8 months ago by jared.andrews07 ★ 16k
1
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1
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526
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Answer: Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
8 months ago by jared.andrews07 ★ 16k
4
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0
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1.2k
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Answer: Answer: R based query about making pairwise matrix
8 months ago by jared.andrews07 ★ 16k
1
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2
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1.1k
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Answer: Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
8 months ago by jared.andrews07 ★ 16k
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0
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2.4k
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Answer: Answer: InferCNV results interpretation
8 months ago by jared.andrews07 ★ 16k
2
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2
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1.4k
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Answer: Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 8 months ago by 43k • written 8 months ago by ★ 16k
1
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0
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400
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Answer: Answer: DESeq2 design formula for time - condition - donor
8 months ago by jared.andrews07 ★ 16k
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0
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by jared.andrews07 ★ 16k
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1
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845
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
8 months ago by jared.andrews07 ★ 16k
4
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2
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1.4k
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Answer: Answer: Problems using ERCC spike-ins for normalization in DESeq2
8 months ago by jared.andrews07 ★ 16k
1
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1
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746
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Answer: Answer: Load MF, CC and BP from org.Hs.eg.db
updated 8 months ago by 43k • written 8 months ago by ★ 16k
1
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0
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826
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Answer: Answer: How to loop over certain files within a directory that belongs to certain sample
8 months ago by jared.andrews07 ★ 16k
603 results • Page 1 of 13
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