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Understanding behaviour of SCTransform in Seurat
Seurat scRNASeq normalization
updated 1 day ago by 142k • written 1 day ago by ▴ 90
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273
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
2 days ago by yura.grabovska ▴ 90
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273
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Answer: Answer: Can 5' and 3' scRNAseq be processed with the same pipeline?
3 days ago by yura.grabovska ▴ 90
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149
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Seurat v5 and how to correctly integrate across multiple experiments
Seurat scRNA R
updated 2 days ago by ★ 2.9k • written 3 days ago by ▴ 90
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1.3k
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Answer: Answer: Confusing results from FindConservedMarkers in Seurat
5 months ago by yura.grabovska ▴ 90
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522
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Answer: Answer: Extracting GSEA gene rankings from gseaResult object
5 months ago by yura.grabovska ▴ 90
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0
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276
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Working with infercnv results for large datasets
single-cell scRNA R CNV infercnv
5 months ago by yura.grabovska ▴ 90
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1
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500
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Dealing with very large gene-lists in GSEA
R fgsea GSEA
updated 13 months ago by ★ 1.8k • written 13 months ago by ▴ 90
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577
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Answer: Answer: boxplot issue
updated 13 months ago by 43k • written 13 months ago by ▴ 90
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537
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Answer: Answer: heatmap issue
13 months ago by yura.grabovska ▴ 90
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336
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How to format matrix with negative values for NMF in R
nmf R matrix
15 months ago by yura.grabovska ▴ 90
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454
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Most appropriate method to analysing multi-plate single concentration drug screening
statistics screening drug
18 months ago by yura.grabovska ▴ 90
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308
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SinEx DB 2.0 local version
SEG exons genes
19 months ago by yura.grabovska ▴ 90
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298
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Annotate peptide sequence with source exon
protein R biomaRt
updated 20 months ago by 142k • written 20 months ago by ▴ 90
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2
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1.6k
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Retrieve and count variable barcodes from pooled sequencing fastq
NGS fastq barcodes
updated 2.5 years ago by 8.5k • written 2.5 years ago by ▴ 90
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708
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Comment: Comment: Automatically annotate drugs for their targets
2.5 years ago by yura.grabovska ▴ 90
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2
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708
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Automatically annotate drugs for their targets
drugs annotation
updated 2.5 years ago by ★ 2.2k • written 2.5 years ago by ▴ 90
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1.1k
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Comment: C: Is a paired Wilcoxon test appropriate for analysis of CRISPR gene knock-out scre
3.7 years ago by yura.grabovska ▴ 90
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2
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1.1k
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Is a paired Wilcoxon test appropriate for analysis of CRISPR gene knock-out screen counts?
R gene sequencing
updated 3.7 years ago by 82k • written 3.7 years ago by ▴ 90
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5.4k
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Comment: C: Using limma to find differentially methylated probes across clusters
6.9 years ago by yura.grabovska ▴ 90
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2.3k
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Comment: C: minfi out of band probes
6.9 years ago by yura.grabovska ▴ 90
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2.3k
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Answer: A: minfi out of band probes
7.0 years ago by yura.grabovska ▴ 90
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4
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5.4k
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Using limma to find differentially methylated probes across clusters
R methylation limma contrasts
7.0 years ago by yura.grabovska ▴ 90
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