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360
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Comment: Comment: Pysam pileup and Rsamtools pileup output discrepancy
7 months ago by barslmn ★ 2.2k
16
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9
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1.2k
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Blog: NGS one-liner to call variants
shell sequencing
updated 6 months ago by 43k • written 7 months ago by ★ 2.2k
0
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1
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1.4k
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Comment: Comment: VEP ensemble docker and plugins
7 months ago by barslmn ★ 2.2k
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1
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1.4k
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Comment: Comment: VEP ensemble docker and plugins
updated 7 months ago by 43k • written 7 months ago by ★ 2.2k
0
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1
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1.4k
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Comment: Comment: VEP ensemble docker and plugins
7 months ago by barslmn ★ 2.2k
1
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0
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746
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Comment: Comment: FASTQ to BAM to CRAM to FASTQ
7 months ago by barslmn ★ 2.2k
1
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0
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757
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Comment: Comment: Want to check bam file quality
7 months ago by barslmn ★ 2.2k
1
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0
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538
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Answer: Answer: Commands to do the following in BCFtools or recommendations for another tool
7 months ago by barslmn ★ 2.2k
1
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1
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427
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Comment: Comment: extract first and last n bp from fasta file from multiple fasta file in R
7 months ago by barslmn ★ 2.2k
0
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0
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1.1k
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Comment: Comment: Troubles launch IGV on Linux(Debian)
7 months ago by barslmn ★ 2.2k
0
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0
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518
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Comment: Comment: Splitting VCF/BCF file into seperate gene files
7 months ago by barslmn ★ 2.2k
0
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1
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1.1k
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Answer: Answer: Troubles launch IGV on Linux(Debian)
7 months ago by barslmn ★ 2.2k
0
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1
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1.1k
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Comment: Comment: Troubles launch IGV on Linux(Debian)
7 months ago by barslmn ★ 2.2k
0
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0
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779
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Comment: Comment: BED files
7 months ago by barslmn ★ 2.2k
0
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0
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393
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Comment: Comment: Merging the filename with tsv files for master file
7 months ago by barslmn ★ 2.2k
0
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0
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384
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Comment: Comment: Download an example of fully-imputed VCF files ?
7 months ago by barslmn ★ 2.2k
1
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1
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650
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Answer: Answer: Fetch genomic region(s) from refseq genomes
8 months ago by barslmn ★ 2.2k
2
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0
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1.1k
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Answer: Answer: What is the common practice to view WGS data on IGV?
8 months ago by barslmn ★ 2.2k
0
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0
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1.6k
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Comment: Comment: Converting custom VCF to standard VCF
8 months ago by barslmn ★ 2.2k
1
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0
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1.6k
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Answer: Answer: Converting custom VCF to standard VCF
8 months ago by barslmn ★ 2.2k
0
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0
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1.3k
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Comment: Comment: How to deal with duplicates between two database IDs?
9 months ago by barslmn ★ 2.2k
0
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1
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1.3k
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Answer: Answer: How to deal with duplicates between two database IDs?
9 months ago by barslmn ★ 2.2k
0
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1
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1.2k
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Comment: Comment: Tool to search for missing genes among genome annotation versions?
9 months ago by barslmn ★ 2.2k
2
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1
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1.2k
views
Answer: Answer: Tool to search for missing genes among genome annotation versions?
9 months ago by barslmn ★ 2.2k
1
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0
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557
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Answer: Answer: Annotate VCF with RepeatMasker
9 months ago by barslmn ★ 2.2k
7
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0
replies
615
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Tutorial: Polygenic Risk Score Calculation
genetic-burden r prs ggplot glm
9 months ago by barslmn ★ 2.2k
0
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0
replies
951
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Comment: Comment: how to change the 'bcftools plugin' temp directory
9 months ago by barslmn ★ 2.2k
0
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1
reply
951
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Comment: Comment: how to change the 'bcftools plugin' temp directory
9 months ago by barslmn ★ 2.2k
1
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0
replies
847
views
Comment: Comment: Calculate the percentage of genomic region covered from the BED file.
9 months ago by barslmn ★ 2.2k
6
votes
1
reply
891
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Answer: Answer: IGV - is it possible to tell what allele a read is from?
9 months ago by barslmn ★ 2.2k
0
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0
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703
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Comment: Comment: How to read Varscan VCF output in column "Cons"?
10 months ago by barslmn ★ 2.2k
0
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1
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703
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Comment: Comment: How to read Varscan VCF output in column "Cons"?
10 months ago by barslmn ★ 2.2k
0
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0
replies
662
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Comment: Comment: GATK not working when clone to VM
10 months ago by barslmn ★ 2.2k
0
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0
replies
438
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Comment: Comment: On retrieving SNPs from dbSNP
10 months ago by barslmn ★ 2.2k
1
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0
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1.0k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
10 months ago by barslmn ★ 2.2k
2
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1
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1.0k
views
Answer: Answer: Contig labels in BAM off by 1, how do I fix it?
10 months ago by barslmn ★ 2.2k
1
vote
1
reply
891
views
Comment: Comment: Centromere hg38
10 months ago by barslmn ★ 2.2k
0
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0
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373
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Why am I seeing this variants genotype as 1/0?
VCF
11 months ago by barslmn ★ 2.2k
0
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1
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1.3k
views
Comment: Comment: Adapter trimming using fastp
11 months ago by barslmn ★ 2.2k
0
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0
replies
3.1k
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Comment: Comment: What is NCBI Gene ID, where to find it and how to convert to entrez ID?
11 months ago by barslmn ★ 2.2k
1
vote
0
replies
2.6k
views
Comment: Comment: ggsave() bug in ggplot2?
11 months ago by barslmn ★ 2.2k
0
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1
reply
2.6k
views
Comment: Comment: ggsave() bug in ggplot2?
11 months ago by barslmn ★ 2.2k
0
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1
reply
2.6k
views
Comment: Comment: ggsave() bug in ggplot2?
11 months ago by barslmn ★ 2.2k
3
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1
reply
1.2k
views
Comment: Comment: BioInformatics, Software
11 months ago by barslmn ★ 2.2k
2
votes
1
reply
937
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Answer: Answer: How to calculate kinship matrix table from vcf file
11 months ago by barslmn ★ 2.2k
1
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0
replies
497
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Comment: Comment: bioinformatic analysis protocol performed by CD Genomics
11 months ago by barslmn ★ 2.2k
1
vote
1
reply
1.7k
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Comment: Comment: Docker Error while running nf-core/rnaseq pipeline
11 months ago by barslmn ★ 2.2k
0
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1
reply
1.7k
views
Comment: Comment: Docker Error while running nf-core/rnaseq pipeline
11 months ago by barslmn ★ 2.2k
0
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0
replies
1.1k
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Comment: Comment: Subset FASTA file using partial matching of headers with list of taxon names
12 months ago by barslmn ★ 2.2k
0
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0
replies
2.4k
views
Comment: Comment: Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
12 months ago by barslmn ★ 2.2k
339 results • Page 2 of 7
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