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questions
2
votes
1
reply
575
views
Ancestral sequence reconstruction at each node of a gene tree
tree
reconstruction
ancestral
gene
updated 16 months ago by
Jesse
▴ 770 • written 16 months ago by
biomonte
▴ 220
5
votes
3
replies
851
views
Split multiple annotations from SnpEff
SnpEff
AWK
Bash
VCF
Annotation
updated 20 months ago by
iraun
6.2k • written 20 months ago by
biomonte
▴ 220
1
vote
2
replies
868
views
Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
orthologs
OMAmer
HOGs
oma
pyHAM
2.3 years ago by
biomonte
▴ 220
9
votes
11
replies
4.3k
views
BED file: Find intervals that overlap a certain percentage and keep the longest one
Bed
bedtools
bash
bedops
3.0 years ago by
biomonte
▴ 220
4
votes
4
replies
3.3k
views
How to identify single-copy genes across multiple complete genomes?
target capture
hybpiper
spades
single-copy genes
6.0 years ago by
biomonte
▴ 220
0
votes
2
replies
1.8k
views
Script error when extracting sequences of a list of orthologous groups
bash
orthomcl
software error
blast
updated 6.1 years ago by
ahmedmagds
• 0 • written 7.2 years ago by
biomonte
▴ 220
1
vote
1
reply
2.0k
views
Paralog detection after target capture - HybPiper
HybPiper
target capture
paralogy
SPAdes
Exonerate
6.1 years ago by
biomonte
▴ 220
4
votes
6
replies
4.4k
views
Is TransDecoder predicting the "true" set of protein-coding regions?
RNA-Seq
TransDecoder
ORF
updated 6.9 years ago by
Biostar
20 • written 7.1 years ago by
biomonte
▴ 220
2
votes
1
reply
2.7k
views
Converting a big SNP genotype table to plink (.ped) file for ADMIXTURE
plink
SNP
PED format
admixture
perl
updated 7.0 years ago by
Philipp Bayer
8.5k • written 7.0 years ago by
biomonte
▴ 220
3
votes
1
reply
2.3k
views
How to correctly format WEGO's input with Perl
RNA-Seq
perl
wego
gene ontology
trinotate
7.6 years ago by
biomonte
▴ 220
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