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mmats010
mmats010
Reputation:
80 (New)
Joined:
10.4 years ago
Last seen:
8.6 years ago
Latest posts by user
1 vote
0 replies
0 views
Answer: A: GFF to fasta
written by mmats010 8
0 votes
1 reply
3.5K views
GFF to fasta
sequencing annotation perl gff genome
written by mmats010 8
0 votes
1 reply
0 views
Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
written by mmats010 8
0 votes
0 replies
0 views
Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
written by mmats010 8
0 votes
0 replies
0 views
Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
written by mmats010 8
0 votes
7 replies
7.3K views
Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
bionano dovetail pacbio denovo illumina
updated by Philipp Bayer 888 • | written by mmats010 8
2 votes
0 replies
0 views
Comment: C: Viewing CNV read depth data along multiple chromosomes in a single plot via R
written by mmats010 8
1 vote
5 replies
5.9K views
Viewing CNV read depth data along multiple chromosomes in a single plot via R
r sequencing
updated by S AR 8 • | written by mmats010 8
0 votes
0 replies
0 views
Comment: C: Eliminating calls for a particular chromosome, per sample, in a multisample VCF
written by mmats010 8
0 votes
2 replies
2.2K views
Eliminating calls for a particular chromosome, per sample, in a multisample VCF
snp vcf aneuploid
updated by Pierre Lindenbaum 17K • | written by mmats010 8
1 vote
0 replies
0 views
Comment: C: Is there a quick method to extract regularly-spaced features/SNPs from a VCF fil
written by mmats010 8
0 votes
2 replies
3.0K views
Is there a quick method to extract regularly-spaced features/SNPs from a VCF file?
snp gatk vcf sequencing mapping
updated by mbyvcm 48 • | written by mmats010 8
0 votes
0 replies
0 views
Comment: C: Is there a tool that can output the raw genotype call (i.e., 0/1) rather than th
written by mmats010 8
3 votes
6 replies
4.3K views
Is there a tool that can output the raw genotype call (i.e., 0/1) rather than the actual basecall (A/T) from a VCF file?
gatk variantstotable snp genotyping
updated by Jorge Amigo 1.4K • | written by mmats010 8
0 votes
1 reply
3.4K views
Determining ploidy via read ratios with HaplotypeCaller: skewed results?
snp gatk ploidy illumina r
updated by Biostar 380 • | written by mmats010 8
0 votes
0 replies
1 view
Answer: A: Best method to call SNPs/genotype many bam files from only a defined list of var
written by mmats010 8
0 votes
2 replies
3.7K views
Why is bwa terminating alignment and exiting the script without an error message?
alignment bwa sequencing genome
updated by agathejouet 2 • | written by mmats010 8
0 votes
3 replies
5.7K views
Best method to call SNPs/genotype many bam files from only a defined list of variants/SNPs?
samtools genotyping bam sequencing genome
updated by Ram 4.5K • | written by mmats010 8
0 votes
0 replies
0 views
Comment: C: NCBI edirect "command not found"
updated by GenoMax 16K • | written by mmats010 8
1 vote
3 replies
5.2K views
NCBI edirect "command not found"
edirect entrez ncbi commandline unix
updated by GenoMax 16K • | written by mmats010 8
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