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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
17 months ago by liorglic ★ 1.4k
3
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1
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553
views
Quickly examining many MSAs
MSA
updated 18 months ago by ★ 1.7k • written 18 months ago by ★ 1.4k
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0
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1.1k
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Comment: Comment: Reciprocal (Multiple-way) Best BLAST Hits
18 months ago by liorglic ★ 1.4k
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1
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1.1k
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Comment: Comment: Multiple-way Reciprocal Best BLAST Hits
18 months ago by liorglic ★ 1.4k
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0
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1.3k
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Comment: Comment: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
18 months ago by liorglic ★ 1.4k
0
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0
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1.3k
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Comment: Comment: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
18 months ago by liorglic ★ 1.4k
1
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1
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1.3k
views
Answer: Answer: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
updated 3 months ago by 44k • written 18 months ago by ★ 1.4k
1
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2
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2.8k
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Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by liorglic ★ 1.4k
2
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1
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2.2k
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Comment: Comment: IGV visualization pattern for RNA-Seq mapping
18 months ago by liorglic ★ 1.4k
0
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0
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1.9k
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Answer: Answer: FASTA to GTF/GFF using reference genome
18 months ago by liorglic ★ 1.4k
1
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1
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1.3k
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Comment: Comment: Improving existing genome with new RNA-seq data
18 months ago by liorglic ★ 1.4k
1
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0
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718
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Answer: Answer: Remove part of a header in a fasta file
18 months ago by liorglic ★ 1.4k
1
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1
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2.2k
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Comment: Comment: IGV visualization pattern for RNA-Seq mapping
18 months ago by liorglic ★ 1.4k
1
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1
reply
1.3k
views
Comment: Comment: Improving existing genome with new RNA-seq data
18 months ago by liorglic ★ 1.4k
1
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0
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707
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Answer: Answer: Find mate reads in two different pair-end reads files.
18 months ago by liorglic ★ 1.4k
0
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0
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1.0k
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Answer: Answer: align kmers to reference genome
19 months ago by liorglic ★ 1.4k
0
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1
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1.8k
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Comment: Comment: Antismash on Fasta files
20 months ago by liorglic ★ 1.4k
0
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0
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1.7k
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Comment: Comment: Tool for extracting part of aligned sequence by CIGAR string
20 months ago by liorglic ★ 1.4k
0
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1
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1.2k
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Comment: Comment: In GWAS Analysis, my top most significant SNPs from pre-imputation data does not
20 months ago by liorglic ★ 1.4k
0
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0
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2.2k
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Comment: Comment: How can i find longest sequence in fasta file on terminal
20 months ago by liorglic ★ 1.4k
0
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1
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2.3k
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Comment: Comment: fast way to get last position in a large indexed VCF?
20 months ago by liorglic ★ 1.4k
2
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0
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951
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Answer: Answer: augustus gene prediction
20 months ago by liorglic ★ 1.4k
0
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0
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643
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Comment: Comment: Construct a phylogenetic tree of apes
20 months ago by liorglic ★ 1.4k
0
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1
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643
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Comment: Comment: Construct a phylogenetic tree of apes
20 months ago by liorglic ★ 1.4k
0
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1
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2.4k
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Comment: Comment: augustus installation with conda
20 months ago by liorglic ★ 1.4k
0
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1
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2.2k
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Answer: Answer: How can i find longest sequence in fasta file on terminal
20 months ago by liorglic ★ 1.4k
1
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1
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1.4k
views
Comment: Comment: Extract paired-end reads with one end falls within a given region from a bam fil
20 months ago by liorglic ★ 1.4k
8
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13
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2.9k
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8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
0
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1
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2.9k
views
Comment: Comment: Commercial software for genomics / NGS / bioinformatics
20 months ago by liorglic ★ 1.4k
0
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2
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2.9k
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Comment: Comment: Commercial software for genomics / NGS / bioinformatics
20 months ago by liorglic ★ 1.4k
0
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0
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746
views
Comment: Comment: SNP calling from plant whole genome assemblies
22 months ago by liorglic ★ 1.4k
0
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2
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746
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SNP calling from plant whole genome assemblies
calling snp whole assembly genome
22 months ago by liorglic ★ 1.4k
1
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0
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2.2k
views
Comment: Comment: convert csv to fasta format using python
24 months ago by liorglic ★ 1.4k
0
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1
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702
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Comment: Comment: URGENT : GC @5,20,50 : Fraction of GC content in the bases around the variant po
2.0 years ago by liorglic ★ 1.4k
2
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1
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1.6k
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Answer: Answer: How to create a phylogenetic tree from 30 VCF files
2.0 years ago by liorglic ★ 1.4k
0
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0
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712
views
Comment: Comment: Sort the fasta sequences based on the desired amino acid content
2.1 years ago by liorglic ★ 1.4k
1
vote
1
reply
881
views
Comment: Comment: Is it possible to create a phylogenetic tree based on 10 proteins per organism
2.1 years ago by liorglic ★ 1.4k
0
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1
reply
2.3k
views
Answer: Answer: How to merge the annotation from different softwares?
2.1 years ago by liorglic ★ 1.4k
0
votes
1
reply
881
views
Comment: Comment: Is it possible to create a phylogenetic tree based on 10 proteins per organism
2.1 years ago by liorglic ★ 1.4k
0
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0
replies
575
views
Comment: Comment: Over view informations about my genomes
2.1 years ago by liorglic ★ 1.4k
4
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0
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1.9k
views
Answer: Answer: Build Phylogenetic Tree from SNPs
2.1 years ago by liorglic ★ 1.4k
0
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0
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1.0k
views
Comment: Comment: vg for gene presence-absence analysis
2.1 years ago by liorglic ★ 1.4k
0
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2
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1.0k
views
vg for gene presence-absence analysis
vg pan-genome vgteam PAV graph variation
2.1 years ago by liorglic ★ 1.4k
2
votes
2
replies
899
views
Unable to parse Open Tree of Life Newick with ete3 (python)
newick python ete3
updated 2.1 years ago by 21k • written 2.1 years ago by ★ 1.4k
1
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0
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899
views
Answer: Answer: Unable to parse Open Tree of Life Newick with ete3 (python)
2.1 years ago by liorglic ★ 1.4k
0
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1
reply
704
views
Comment: Comment: DGE - command line alternatives to R packages?
2.2 years ago by liorglic ★ 1.4k
0
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4
replies
704
views
DGE - command line alternatives to R packages?
DGE CLI RNA-seq R
updated 2.2 years ago by 4.2k • written 2.2 years ago by ★ 1.4k
1
vote
2
replies
613
views
Running Galaxy tools on a HPC cluster using CLI?
galaxy HPC
updated 2.2 years ago by ★ 2.0k • written 2.2 years ago by ★ 1.4k
0
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0
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761
views
Comment: Comment: What metrics to use for comparing alignment-based methods and variant calling fo
2.2 years ago by liorglic ★ 1.4k
3
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1
reply
1.8k
views
Answer: Answer: What do we call a transcript?
2.3 years ago by liorglic ★ 1.4k
282 results • Page 2 of 6
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