Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
0
votes
0
replies
400
views
Why does bcftools call from different max-depth (-d) value in mpileup give inconstant GT values?
vcf variant-calling bcftools mpileup
updated 11 months ago by 43k • written 15 months ago by ▴ 20
0
votes
0
replies
321
views
Which files contain overview information from Monarch Initiative?
monarch initiative
16 months ago by magnolia ▴ 20
1
vote
2
replies
684
views
How to obtain upstream variant genes?
snp dbsnp gene variant
17 months ago by magnolia ▴ 20
4
votes
8
replies
1.2k
views
Is possible to run VEP without consequence calculation?
vep annotation
19 months ago by magnolia ▴ 20
1
vote
2
replies
483
views
Is there a resource on how to create variant annotator from scratch?
annotation variant
19 months ago by magnolia ▴ 20
0
votes
0
replies
392
views
How assign PAR regions to X or Y for an rsID in VCF?
vcf rsid par
20 months ago by magnolia ▴ 20
5
votes
10
replies
2.2k
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38 ncbi grch37 fasta
20 months ago by magnolia ▴ 20
0
votes
0
replies
561
views
How to install/run pysam bcftools plugins?
bcftools pysam
updated 11 months ago by 43k • written 20 months ago by ▴ 20
1
vote
2
replies
504
views
How variant locations work when there is an INDEL around?
snp indel variant
21 months ago by magnolia ▴ 20
1
vote
4
replies
937
views
How to insert dbSNP in a database?
dbsnp database
21 months ago by magnolia ▴ 20
9
votes
18
replies
3.2k
views
How to determine assembly of a VCF?
vcf
updated 21 months ago by 4.2k • written 22 months ago by ▴ 20
5
votes
4
replies
3.1k
views
Is there equivalent of bgzip in Python?
python bgzip
2.1 years ago by magnolia ▴ 20
3
votes
8
replies
1.8k
views
Why VCF POS different in dbSNP and ClinVar?
vep clinvar dbsnp vcf
2.4 years ago by magnolia ▴ 20
0
votes
2
replies
730
views
How to parse VCF in Node/Javascript? (equivalent of pyVCF)
javascript node vcf
2.4 years ago by magnolia ▴ 20
5
votes
5
replies
1.6k
views
Why VEP doesn't take strand into account?
vep ensembl snp
updated 3.3 years ago by 23k • written 3.3 years ago by ▴ 20
3
votes
7
replies
1.2k
views
Why VEP annotates non-variants (homozygous reference)?
vep ensembl SNP
updated 3.3 years ago by 23k • written 3.3 years ago by ▴ 20
1
vote
1
reply
899
views
How to get human gene locations via Python?
gene python
3.8 years ago by magnolia ▴ 20
6
votes
5
replies
2.1k
views
VEP outputs the similar INFO CSQ data multiple times
VEP VCF TSV ensembl annotation
updated 20 months ago by ▴ 90 • written 4.0 years ago by ▴ 20
0
votes
7
replies
1.5k
views
What's the best way to serve VCF data on web?
vcf web database postgres
updated 4.1 years ago by ★ 2.9k • written 4.1 years ago by ▴ 20
0
votes
9
replies
1.4k
views
Adding consequences field (INFO) when using --allow_non_variant in VEP
vep vcf annotation
updated 4.3 years ago by 23k • written 4.3 years ago by ▴ 20
0
votes
2
replies
916
views
Is there any inheritance information source other than OMIM and free for commercial use?
gene database variant recessive dominant
5.0 years ago by magnolia ▴ 20
21 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6