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Comment:
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
10 days ago by
WouterDeCoster
47k
1
vote
3
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250
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Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
10 days ago by
WouterDeCoster
47k
2
votes
1
reply
925
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Answer:
Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by
WouterDeCoster
47k
0
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0
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519
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Comment:
Comment: Find reference fasta based on M5/MD5 string
3 months ago by
WouterDeCoster
47k
0
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0
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519
views
Comment:
Comment: Find reference fasta based on M5/MD5 string
3 months ago by
WouterDeCoster
47k
0
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0
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815
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Comment:
Comment: Isolating and extracting regions in VCF file
3 months ago by
WouterDeCoster
47k
2
votes
4
replies
519
views
Find reference fasta based on M5/MD5 string
reference
fasta
3 months ago by
WouterDeCoster
47k
0
votes
0
replies
494
views
Comment:
Comment: Re-format sample columns in VCF file
3 months ago by
WouterDeCoster
47k
0
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1
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1.0k
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Comment:
Comment: ONT Raw Read Sequencing Pipeline
3 months ago by
WouterDeCoster
47k
0
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1
reply
689
views
Comment:
Comment: somatic variant calling without matched normal in long-reads
3 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.0k
views
Comment:
Comment: ONT Raw Read Sequencing Pipeline
3 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.0k
views
Comment:
Comment: ONT Raw Read Sequencing Pipeline
3 months ago by
WouterDeCoster
47k
0
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1
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1.5k
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Comment: How to speed Salmon index up
3 months ago by
WouterDeCoster
47k
2
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1
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1.0k
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Comment:
Comment: Snakemake rule error
4 months ago by
WouterDeCoster
47k
0
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0
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382
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Comment:
Comment: how do I assemble centromere regions in a plant genome?
5 months ago by
WouterDeCoster
47k
0
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0
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345
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Comment:
Comment: DOES MGI SEQUENCING RESULT CONTAINS MULTIPLE FILES FOR SINGLE SAMPLE
5 months ago by
WouterDeCoster
47k
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0
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2.5k
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Comment:
Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
7 months ago by
WouterDeCoster
47k
1
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0
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752
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Comment:
Comment: Expected number of raw reads in fq.gz files in PE sequencing
8 months ago by
WouterDeCoster
47k
0
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0
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268
views
Number of reads per gene in pseudobulk with more or fewer nuclei
nuclei
10x
sequencing
8 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.5k
views
Comment:
Comment: Create a reference genome from aligned bam file
8 months ago by
WouterDeCoster
47k
2
votes
1
reply
1.3k
views
Comment:
Comment: Batch correction for Nanopore RNAseq
10 months ago by
WouterDeCoster
47k
0
votes
0
replies
704
views
Comment:
Comment: Extract samples from a VCF file that contain marker
10 months ago by
WouterDeCoster
47k
0
votes
1
reply
627
views
Answer:
Answer: rust_htslib unrecognized filter ID
10 months ago by
WouterDeCoster
47k
0
votes
0
replies
614
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Answer:
Answer: Truvari error: Failed to parse TBX_VCF - "ead mapping qualities">"
10 months ago by
WouterDeCoster
47k
0
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0
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472
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Comment:
Comment: Pairwise Alignment
11 months ago by
WouterDeCoster
47k
0
votes
1
reply
2.1k
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Comment:
Comment: minimap's SAM file MAPQ value for the unique alignments
11 months ago by
WouterDeCoster
47k
1
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0
replies
607
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Comment:
Comment: Colleges
11 months ago by
WouterDeCoster
47k
0
votes
1
reply
880
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Answer:
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
11 months ago by
WouterDeCoster
47k
1
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0
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803
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Comment:
Comment: rna long read length distibution
11 months ago by
WouterDeCoster
47k
0
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0
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545
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Comment:
Comment: Mapping reads to a multifasta reference
11 months ago by
WouterDeCoster
47k
0
votes
1
reply
986
views
Comment:
Comment: Estimate sizes of repeats in a especific Gene
11 months ago by
WouterDeCoster
47k
1
vote
0
replies
1.9k
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Comment:
Comment: How to Diagnose Fragile X from Whole Genome Sequencing
11 months ago by
WouterDeCoster
47k
1
vote
1
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1.9k
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Comment:
Comment: How to Diagnose Fragile X from Whole Genome Sequencing
11 months ago by
WouterDeCoster
47k
0
votes
0
replies
1.7k
views
Comment:
Comment: Nanopore config files
11 months ago by
WouterDeCoster
47k
0
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1
reply
1.7k
views
Answer:
Answer: Nanopore config files
11 months ago by
WouterDeCoster
47k
0
votes
0
replies
570
views
Comment:
Comment: Change VCF File Reference Genome to a Local .FA File
11 months ago by
WouterDeCoster
47k
0
votes
1
reply
871
views
Comment:
Comment: problem with bedtools getfasta
12 months ago by
WouterDeCoster
47k
0
votes
0
replies
825
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Answer:
Answer: htseq-count : dosen't show options in bash ln ubuntu
12 months ago by
WouterDeCoster
47k
0
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0
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1.1k
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Comment:
Comment: Genome sequenced [%] over time graph (Nanopore)
13 months ago by
WouterDeCoster
47k
3
votes
0
replies
1.1k
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Comment:
Comment: Genome sequenced [%] over time graph (Nanopore)
13 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.1k
views
Comment:
Comment: Genome sequenced [%] over time graph (Nanopore)
13 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.2k
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Comment:
Comment: How can I generate VCF file with two different assembled genome fasta?
13 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.1k
views
Comment:
Comment: Genome sequenced [%] over time graph (Nanopore)
13 months ago by
WouterDeCoster
47k
0
votes
0
replies
1.1k
views
Comment:
Comment: featureCounts problem in reading Gff
13 months ago by
WouterDeCoster
47k
0
votes
1
reply
1.1k
views
Comment:
Comment: featureCounts problem in reading Gff
13 months ago by
WouterDeCoster
47k
0
votes
0
replies
814
views
Comment:
Comment: Bioinformatics package
13 months ago by
WouterDeCoster
47k
0
votes
0
replies
907
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Comment:
Comment: Trying to make a Mauve alignment with 2 sequences and keep getting error code 3
14 months ago by
WouterDeCoster
47k
2
votes
0
replies
559
views
Answer:
Answer: N50 value is equal to the single contig?
14 months ago by
WouterDeCoster
47k
2
votes
0
replies
2.3k
views
Answer:
Answer: long read + salmon? (transcript abundance)
14 months ago by
WouterDeCoster
47k
1
vote
0
replies
6.4k
views
Answer:
Answer: Filtering out the spliced reads from bam file.
16 months ago by
WouterDeCoster
47k
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