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Showing :
comments
0
votes
2
replies
3.1k
views
Comment:
C: Automatically feeding a good mate inner distance to TopHat2
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
2.7k
views
Comment:
C: Cutadapt paired end reads with 1 adapter list fasta
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.0k
views
Comment:
C: CGHub/TCGA RNA-Seq data trimming adapters
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
15k
views
Comment:
C: Where to get list of all Illumina adapters
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
1
vote
1
reply
2.4k
views
Comment:
C: Using ref.fa (with random contig) on bam file aligned without random contigs
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
2.9k
views
Comment:
C: Request for karyotypically sorted Ensembl reference fasta and its dbSNP vcf for
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.7k
views
Comment:
C: Automating pre-alignment (and post-alignment) quality control
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
7.4k
views
Comment:
C: Change chromosome notation to match a new reference
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.7k
views
Comment:
C: Automating pre-alignment (and post-alignment) quality control
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
2.8k
views
Comment:
C: Mixed opinions on somatic variant calling method
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.5k
views
Comment:
C: NCBI dbSNP compatibility w/ Ensembl whole genome
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.5k
views
Comment:
C: NCBI dbSNP compatibility w/ Ensembl whole genome
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.0k
views
Comment:
C: Bam file doesn't show on IGV and pileup VCF has only header
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
2.1k
views
Comment:
C: [GATK] Weird error using Picard SortVcf on COSMIC file
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
1.9k
views
Comment:
C: No somatic mutation in tumor sample
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
1.9k
views
Comment:
C: No somatic mutation in tumor sample
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
5.8k
views
Comment:
C: Bowtie memory warning
8.0 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.8k
views
Comment:
C: Salmon/Sailfish for repeat element quantification?
8.1 years ago by
umn_bist
▴ 390
0
votes
1
reply
5.0k
views
Comment:
C: GATK MuTect2 duplication filter
8.1 years ago by
umn_bist
▴ 390
0
votes
0
replies
1.9k
views
Comment:
C: cBioPortal 'Mutations' tab
8.1 years ago by
umn_bist
▴ 390
0
votes
1
reply
4.3k
views
Comment:
C: BBDuk trimming concern: large discarded, too aggressive (?)
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
4.3k
views
Comment:
C: BBDuk trimming concern: large discarded, too aggressive (?)
8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
4.3k
views
Comment:
C: BBDuk trimming concern: large discarded, too aggressive (?)
8.2 years ago by
umn_bist
▴ 390
0
votes
2
replies
4.4k
views
Comment:
C: How to build a custom reference genome (from a BED file)
8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
1.9k
views
Comment:
C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
1.9k
views
Comment:
C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
1.9k
views
Comment:
C: Faster alternative to Prinseq PE trimming polyN
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
5.6k
views
Comment:
C: Why is normal blood used for matched tumor (instead of adjacent norm tissue)?
8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
10.0k
views
Comment:
C: FastQC: 'Per base sequence content' for RNA-Seq
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.6k
views
Comment:
C: [ERROR] Malformed VCF: empty alleles are not permitted in VCF records
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.5k
views
Comment:
C: NCBI dbSNP compatibility w/ Ensembl whole genome
8.2 years ago by
umn_bist
▴ 390
0
votes
0
replies
2.1k
views
Comment:
C: RNA-seq expression profiling
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
2.8k
views
Comment:
C: How to generate a mask gtf for use with cufflinks
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
1.9k
views
Comment:
C: Conceptual question regarding retrotransposon (RNA-seq) analysis
8.2 years ago by
umn_bist
▴ 390
0
votes
1
reply
8.4k
views
Comment:
C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
8.4k
views
Comment:
C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
8.4k
views
Comment:
C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
1.6k
views
Comment:
Comment: Trouble using if string in column 3 of .csv exist, then statement
updated 22 months ago by
Ram
43k • written 8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
5.6k
views
Comment:
C: STAR add RG
8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
5.6k
views
Comment:
C: STAR add RG
8.3 years ago by
umn_bist
▴ 390
0
votes
2
replies
5.6k
views
Comment:
C: STAR add RG
8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
3.4k
views
Comment:
C: RNA-seq dedupe PCR contamination before or after mapping
8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
1.9k
views
Comment:
C: Pipeline for >100 RNA-Seq PE samples
8.3 years ago by
umn_bist
▴ 390
0
votes
1
reply
4.2k
views
Comment:
C: cutadapt: forward and reverse adapter sequence options
8.3 years ago by
umn_bist
▴ 390
0
votes
0
replies
3.1k
views
Comment:
C: Automatically feeding a good mate inner distance to TopHat2
8.3 years ago by
umn_bist
▴ 390
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