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Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
24 months ago by Alex Reynolds 35k
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Answer: Answer: How to create bed file from list of variants with indels and bp values
2.0 years ago by Alex Reynolds 35k
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Comment: Comment: sliding windows over genome
2.0 years ago by Alex Reynolds 35k
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Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
2.0 years ago by Alex Reynolds 35k
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Answer: Answer: sliding windows over genome
2.0 years ago by Alex Reynolds 35k
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6.9k
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Comment: Comment: Finding Chip Seq Overlaps with Bed files
2.1 years ago by Alex Reynolds 35k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.1 years ago by Alex Reynolds 35k
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Answer: Answer: How to interpret similar motifs in Homer results
2.1 years ago by Alex Reynolds 35k
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1.4k
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Comment: Comment: Why the bed file not recognized as a bed file
2.1 years ago by Alex Reynolds 35k
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1.4k
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Answer: Answer: Why the bed file not recognized as a bed file
2.1 years ago by Alex Reynolds 35k
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1.1k
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Answer: Answer: Circos plot
2.1 years ago by Alex Reynolds 35k
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923
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Answer: Answer: SARS-CoV-2 genome on NCBI website
2.1 years ago by Alex Reynolds 35k
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Answer: Answer: deeptools plotHeatMap - Convert bed files to gene list?
2.2 years ago by Alex Reynolds 35k
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1.4k
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Comment: Comment: deeptools plotHeatMap - Convert bed files to gene list?
2.2 years ago by Alex Reynolds 35k
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890
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Comment: Comment: Find genes of interest in large unannotated genome files
2.2 years ago by Alex Reynolds 35k
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4
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2.6k
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How to iterate over rows of pyranges object
pyranges
updated 2.2 years ago by ▴ 10 • written 3.2 years ago by 35k
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890
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Answer: Answer: Find genes of interest in large unannotated genome files
2.2 years ago by Alex Reynolds 35k
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788
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Answer: Answer: bedtools -u not giving unique files
2.2 years ago by Alex Reynolds 35k
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1.9k
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Answer: Answer: How to convert .wib files to .wig or .bed?
2.3 years ago by Alex Reynolds 35k
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805
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Comment: Comment: Determining the transcription factor activators for a particular gene
2.3 years ago by Alex Reynolds 35k
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Answer: Answer: Map genomic coordinate to specific chromosome region
2.3 years ago by Alex Reynolds 35k
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1.1k
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Answer: Answer: TET2 Binding Motifs BED file
2.3 years ago by Alex Reynolds 35k
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843
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Comment: Comment: Non-zero return code 127 from
2.3 years ago by Alex Reynolds 35k
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Answer: Answer: Tips and tricks to improve data visualization in bioinformatics
2.3 years ago by Alex Reynolds 35k
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1.7k
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Comment: Comment: Mince a vcf into n bins of a given range
2.4 years ago by Alex Reynolds 35k
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1.7k
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Answer: Answer: Mince a vcf into n bins of a given range
2.4 years ago by Alex Reynolds 35k
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1.5k
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Answer: Answer: Change the interval of bed file
2.4 years ago by Alex Reynolds 35k
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4.1k
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Answer: Answer: How to create specific .bed files for a panel of genes
2.4 years ago by Alex Reynolds 35k
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1.5k
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Answer: Answer: Merge two multi-chromosome WIG files
2.4 years ago by Alex Reynolds 35k
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3.0k
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Answer: Answer: Getting peak heights from TF chIP-seq data (wig file)
2.4 years ago by Alex Reynolds 35k
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3.2k
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Answer: Answer: Random Subset of Individuals from .BED File (.ped not available)
2.4 years ago by Alex Reynolds 35k
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861
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Answer: Answer: are there some software to compute depth？
2.4 years ago by Alex Reynolds 35k
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1.3k
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Answer: Answer: Annotating genes from the coordinates of variants of a VCF file
2.4 years ago by Alex Reynolds 35k
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4.0k
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Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.4 years ago by Alex Reynolds 35k
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1
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1.1k
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Comment: Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
2.4 years ago by Alex Reynolds 35k
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1.2k
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Answer: Answer: How to describe an insertion in BED format file?
2.4 years ago by Alex Reynolds 35k
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2.2k
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Comment: Comment: To create a multi fasta file which contains each gene's exons
2.4 years ago by Alex Reynolds 35k
2
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902
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.4 years ago by Alex Reynolds 35k
1
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2.2k
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Comment: Comment: To create a multi fasta file which contains each gene's exons
2.4 years ago by Alex Reynolds 35k
1
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2.2k
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Answer: Answer: To create a multi fasta file which contains each gene's exons
2.5 years ago by Alex Reynolds 35k
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1.1k
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Answer: Answer: Plotting a long string of (x,y) values as a chromosome
2.5 years ago by Alex Reynolds 35k
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1.3k
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Comment: Comment: Create junctions from Bed file for IGV visualization
2.5 years ago by Alex Reynolds 35k
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1
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1.3k
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Answer: Answer: Create junctions from Bed file for IGV visualization
2.5 years ago by Alex Reynolds 35k
1
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2.5k
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Answer: Answer: How to cut a 15000 sequence file into multiple files of 1000nt each and save it
2.5 years ago by Alex Reynolds 35k
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1.3k
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Comment: Comment: Bioinformatics in Graviton2 AWS
2.5 years ago by Alex Reynolds 35k
2
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569
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News: BED format specification
bed bedops
2.5 years ago by Alex Reynolds 35k
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1.7k
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Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
2.5 years ago by Alex Reynolds 35k
2
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1
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964
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Answer: Answer: BEDOPS bedmap confusing file for option
2.5 years ago by Alex Reynolds 35k
1
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1
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848
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Answer: Answer: How to find gene annotation given a position in a bacterial genome
2.5 years ago by Alex Reynolds 35k
2
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0
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973
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Answer: Answer: Fq file to table
2.5 years ago by Alex Reynolds 35k
2,877 results • Page 3 of 58
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