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Answer: Answer: GEO dataset extraction
7 months ago by seidel 11k
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602
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Answer: Answer: MACS2 peak calling and drug treatment
9 months ago by seidel 11k
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609
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Answer: Answer: Plotting Genomic Coordinates
10 months ago by seidel 11k
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1.8k
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Answer: Answer: BAM File: Trim Reads So Only First Base Remains
10 months ago by seidel 11k
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1.1k
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Answer: Answer: Normalization of RNA transcript abundance data
10 months ago by seidel 11k
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1.2k
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Answer: Answer: how to create correlation matrix R
11 months ago by seidel 11k
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3.5k
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Answer: Answer: R scripting
12 months ago by seidel 11k
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937
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Answer: Answer: Is the same order when using p value or q value for compareCluster analysis?
12 months ago by seidel 11k
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758
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Answer: Answer: View all rows in R studio RNASeq
updated 12 months ago by 43k • written 12 months ago by 11k
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519
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Answer: Answer: using GRanges metadata to constrain overlap searches between objects
13 months ago by seidel 11k
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1.0k
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Answer: Answer: colouring variables in r
13 months ago by seidel 11k
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1.0k
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Answer: Answer: Extract gene sequences from multiple fasta using a list from a file:
15 months ago by seidel 11k
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838
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Answer: Answer: Why am I getting only one common value when comparing two excel files?
15 months ago by seidel 11k
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3.3k
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Answer: Answer: How to download all Gene Ontology (GO) IDs with their associated vocabulary?
15 months ago by seidel 11k
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1.1k
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Answer: Answer: Can someone help me search the minimal value of a two column csv file with a sin
15 months ago by seidel 11k
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763
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Answer: Answer: Removing (stubborn) new line from Fasta file sequence?
15 months ago by seidel 11k
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1.4k
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Answer: Answer: How to remove uncharacterized chromosomes from GTF file?
16 months ago by seidel 11k
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1.4k
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Answer: Answer: How to configure a data set with mouse data to one with human gene names using a
16 months ago by seidel 11k
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1.7k
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Answer: Answer: gene symbol not showing for ensembl gene ids using biomart
16 months ago by seidel 11k
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1.5k
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
16 months ago by seidel 11k
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720
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Answer: Answer: Can I get the read length from the count data file in R? How?
16 months ago by seidel 11k
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5.9k
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Answer: Answer: pheatmap: adding row label instead of row names
16 months ago by seidel 11k
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973
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Answer: Answer: how to create a metagene plot for different features of genes?
16 months ago by seidel 11k
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501
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Answer: Answer: Rename Fasta header by Regular expression
16 months ago by seidel 11k
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1.1k
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Answer: Answer: ChIP-seq problem
16 months ago by seidel 11k
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980
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by seidel 11k
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1.2k
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Answer: Answer: find top expressed genes under one specific object
17 months ago by seidel 11k
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761
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Answer: Answer: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
17 months ago by seidel 11k
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731
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Answer: Answer: Non-adjusted p-value used in publication
17 months ago by seidel 11k
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611
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Answer: Answer: How to rename sequence headers
17 months ago by seidel 11k
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633
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Answer: Answer: Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
17 months ago by seidel 11k
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2.0k
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Answer: Answer: Mean read length from bam file
17 months ago by seidel 11k
3
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855
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Answer: Answer: Questions about supplementary file contents of a GEO dataset
17 months ago by seidel 11k
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1.0k
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Answer: Answer: microarray differential expression analyses - probe names to gene symbols
17 months ago by seidel 11k
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942
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Answer: Answer: Error while converting a bed to bigBed file
18 months ago by seidel 11k
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724
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Answer: Answer: How to control width of my boxplots?
18 months ago by seidel 11k
2
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2
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2.5k
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Answer: Answer: The Duplicates Dilemma of ChIP-Seq
18 months ago by seidel 11k
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0
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547
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Answer: Answer: Microarray Database
18 months ago by seidel 11k
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2.8k
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Answer: Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
18 months ago by seidel 11k
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0
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616
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Answer: Answer: separate read1 and read2 from merged fastq file and align against reference geno
18 months ago by seidel 11k
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0
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473
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Answer: Answer: How to know runs are technical repeats
20 months ago by seidel 11k
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2
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972
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Answer: Answer: Using Bedtools coverage for a single alignment file?
20 months ago by seidel 11k
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0
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555
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Answer: Answer: Normalizing read counts while having multiple group of samples with different co
20 months ago by seidel 11k
2
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1
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643
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Answer: Answer: quantify how many reads detect ORF9 and ORF10
22 months ago by seidel 11k
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1
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967
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Answer: Answer: Code to find the list of genes in the DEG table in R?
23 months ago by seidel 11k
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550
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Answer: Answer: How to do RNA-Seq metadata analysis?
23 months ago by seidel 11k
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1.5k
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Answer: Answer: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
24 months ago by seidel 11k
2
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0
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827
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Answer: Answer: RNA-Seq with more conditions
2.0 years ago by seidel 11k
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0
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862
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Answer: Answer: Bowtie produced empty .sam file
2.1 years ago by seidel 11k
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0
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809
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Answer: Answer: RNA-Sequencing on RStudio vs batch scripts on Terminal
2.2 years ago by seidel 11k
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