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2
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6
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2.0k
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LRE3 Retrotransposon sequence
L1 LINE1 LRE3 retrotransposon
8.2 years ago by nchuang ▴ 260
0
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2
replies
1.4k
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Best way to look at nonsynonymous changes in a collection of sequences?
SNP
updated 21 months ago by 43k • written 8.4 years ago by ▴ 260
0
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1
reply
3.9k
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Answer: A: Calling large indels from NGS
8.5 years ago by nchuang ▴ 260
1
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0
replies
11k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
8.7 years ago by nchuang ▴ 260
1
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0
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11k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
8.7 years ago by nchuang ▴ 260
0
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1
reply
11k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
8.7 years ago by nchuang ▴ 260
0
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0
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11k
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Comment: C: GWAS: when is it appropriate to add covariates?
8.7 years ago by nchuang ▴ 260
22
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3
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11k
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GWAS: when is it appropriate to add covariates?
genome gwas
updated 19 months ago by 43k • written 8.7 years ago by ▴ 260
2
votes
0
replies
3.0k
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Answer: Answer: Pre-phasing for imputation BEAGLE or MACH
updated 19 months ago by 43k • written 8.7 years ago by ▴ 260
0
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1
reply
4.8k
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Comment: C: Hardy-Weinberg assumptions in variant calling
8.8 years ago by nchuang ▴ 260
11
votes
7
replies
4.8k
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Hardy-Weinberg assumptions in variant calling
genome SNP
updated 19 months ago by 43k • written 8.8 years ago by ▴ 260
0
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1
reply
4.8k
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Comment: C: Hardy-Weinberg assumptions in variant calling
8.8 years ago by nchuang ▴ 260
0
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0
replies
1.7k
views
What could account for these strange SNP discrepancies?
SNP GATK ANNOVAR
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
3
votes
5
replies
4.2k
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GATK jointgenotyping file locking and too many open files woes
GATK
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
0
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1
reply
4.2k
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Comment: Comment: GATK jointgenotyping file locking and too many open files woes
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
0
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0
replies
4.2k
views
Comment: Comment: GATK jointgenotyping file locking and too many open files woes
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
0
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0
replies
12k
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Comment: Comment: How to count SNPs, InDels
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
1
vote
1
reply
12k
views
Comment: Comment: How to count SNPs, InDels
updated 18 months ago by 43k • written 8.8 years ago by ▴ 260
0
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0
replies
31k
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Comment: C: Count Of Variants
8.8 years ago by nchuang ▴ 260
1
vote
0
replies
3.0k
views
General approach for genotype refinement after GATK processing?
sequencing SNP
updated 16 months ago by 43k • written 8.9 years ago by ▴ 260
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