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rimjhim.roy.ch
rimjhim.roy.ch
Reputation:
80
Joined:
11.3 years ago
Last seen:
5.5 years ago
Location:
European Union
Latest posts by user
0 votes
0 replies
1.6K views
How to crop gff feature into pieces when an overlap is found
gff bedtools annotation genome bedops
written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
4 replies
2.5K views
Extract reads where both pairs maps properly and none of the pairs are split from a bam file
samtools mapping genome alignment sequencing
updated by Pierre Lindenbaum Pierre Lindenbaum • written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
0 replies
1.7K views
Inferring the zygosity of large indels (transposon variants) from bam paired-end mapping to reference and bed coordinate files
zygosity bam alignment indel samtools
written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
2 replies
8.7K views
dist.alignment vs dist.dna for DNA distance calculation
r seqinr ape distance dna
updated by sagitaninta • sagitaninta • written by rimjhim.roy.ch rimjhim.roy.ch
2 votes
0 replies
4.5K views
Get consensus from Muscle alignment with IUPAC ambiguities in python
muscle nucleotide consensus iupac alignment
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
3 votes
1 reply
2.8K views
Suggestions for LTR family level classification
genome alignment repeat transposon ltr
updated by rakeshmbb • rakeshmbb • written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
2 replies
5.6K views
Arlequin Input format for Mismatch distribution
arlequin mismatch-distribution expansion
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
1 reply
0 views
Comment: C: Paired end SRA generating mutiple fastq files
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
3 replies
396 views
Paired end SRA generating mutiple fastq files
fasta fastq-dump 454 next-gen-sequencing
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
2 votes
1 reply
5.7K views
Gff to fasta: Sort and extract sub-feature sequences from fasta in python
python gff biopython gffutils gff2fasta
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
0 votes
1 reply
0 views
Comment: C: How to parse GFF3 file and get start and end coordinates in Python
written by rimjhim.roy.ch rimjhim.roy.ch
1 vote
5 replies
14K views
How to parse GFF3 file and get start and end coordinates in Python
python parse gff3
updated by Ram Ram • written by rimjhim.roy.ch rimjhim.roy.ch
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