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questions
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118
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WGCNA modulePreservation on three expression sets
WGCNA
6 weeks ago by
CTLong
▴ 110
0
votes
2
replies
252
views
Gene set to perform GSVA
GSVA
8 weeks ago by
CTLong
▴ 110
1
vote
1
reply
215
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
4 weeks ago by
CTLong
▴ 110
0
votes
0
replies
127
views
Interpret ImpulseDE2 output?
RNA-seq
10 weeks ago by
CTLong
▴ 110
1
vote
3
replies
507
views
Does the order of the batch variable matter in Limma design matrix?
Batch
updated 8 weeks ago by
Gordon Smyth
★ 7.2k • written 11 weeks ago by
CTLong
▴ 110
0
votes
1
reply
360
views
Speed up Seurat FindClusters execution?
Seurat
updated 11 weeks ago by
colindaven
6.4k • written 11 weeks ago by
CTLong
▴ 110
1
vote
1
reply
292
views
Gene expression of microarray data
Microarray
updated 4 months ago by
Gordon Smyth
★ 7.2k • written 4 months ago by
CTLong
▴ 110
1
vote
3
replies
435
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
4 months ago by
CTLong
▴ 110
2
votes
5
replies
511
views
RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 4 months ago by
Shred
★ 1.4k • written 4 months ago by
CTLong
▴ 110
1
vote
3
replies
567
views
Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 4 months ago by
ATpoint
82k • written 4 months ago by
CTLong
▴ 110
2
votes
4
replies
556
views
Obtain fitted data from DESeq2
DESeq2
4 months ago by
CTLong
▴ 110
0
votes
3
replies
500
views
STAR SjdbOverHang specification
STAR
5 months ago by
CTLong
▴ 110
2
votes
2
replies
576
views
Best method for batch correction of three datasets
RNA-seq
updated 5 months ago by
ATpoint
82k • written 5 months ago by
CTLong
▴ 110
3
votes
4
replies
660
views
Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 5 months ago by
NextGenSeek
▴ 10 • written 5 months ago by
CTLong
▴ 110
4
votes
4
replies
725
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch
correction
5 months ago by
CTLong
▴ 110
1
vote
6
replies
610
views
Discrepancy in total number of bases in trimmed read1 and read2 files after BBDuk
bbduk
5 months ago by
CTLong
▴ 110
1
vote
6
replies
764
views
Parsing XML file from dbGaP
XML
6 months ago by
CTLong
▴ 110
3
votes
2
replies
436
views
Converting STAR Gene-level alignment to TPM expression
RNA-seq
updated 6 months ago by
ATpoint
82k • written 6 months ago by
CTLong
▴ 110
0
votes
0
replies
309
views
What should I do with STAR two-pass novel splice junctions?
RNA-seq
7 months ago by
CTLong
▴ 110
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