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1
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1
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481
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Comment:
Comment: Design matrix Differential expression analysis
12 days ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
451
views
Comment:
Comment: Limma Analysis Agilent Microarray Data (GPL1708)
19 days ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
282
views
Comment:
Comment: permutation test in edgeR
26 days ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
458
views
Comment:
Comment: Difference when using difference number of pathways score to compare between 3 g
28 days ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
440
views
Comment:
Comment: Limma compare between 3 conditions vs 2 conditions
4 weeks ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: Shrink logFC values after edgeR
8 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
498
views
Comment:
Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
8 weeks ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
480
views
Comment:
Comment: Differential express genes in imbalance groups
8 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
230
views
Comment:
Comment: Computing mid parent value for DE analysis
10 weeks ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
1.1k
views
Comment:
Comment: Shrink logFC values after edgeR
10 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
502
views
Comment:
Comment: Does the order of the batch variable matter in Limma design matrix?
11 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
3.9k
views
Comment:
Comment: Can one plot % of variance using the plotMDS function?
11 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
479
views
Comment:
Comment: filtering lowly expressed reads
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
253
views
Comment:
Comment: Design matrix after RUVg correction
3 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
2.9k
views
Comment:
Comment: Converting LogCPM to raw counts for DESEQ2
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
920
views
Comment:
Comment: How do I work out which condition the genes are down-regulated in?
3 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
531
views
Comment:
Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
322
views
Comment:
Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
292
views
Comment:
Comment: Gene expression of microarray data
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
626
views
Comment:
Comment: Differential RNA editing using edgeR
4 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
554
views
Comment:
Comment: how to start DEG analysis after featurecounts
4 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
15 days ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.7k
views
Comment:
Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
541
views
Comment:
Comment: featureCounts error???
6 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
6.7k
views
Comment:
Comment: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
821
views
Comment:
Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
8 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
1.7k
views
Comment:
Comment: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.2k
1
vote
2
replies
1.7k
views
Comment:
Comment: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
3.4k
views
Comment:
Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
3.4k
views
Comment:
Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
2.4k
views
Comment:
Comment: How do I correctly format my limma/eBayes code?
11 months ago by
Gordon Smyth
★ 7.2k
0
votes
2
replies
2.8k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
2.8k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.8k
views
Comment:
Comment: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.2k
3
votes
1
reply
4.5k
views
Comment:
Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
11 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
2.2k
views
Comment:
Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
2.2k
views
Comment:
Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.1k
views
Comment:
Comment: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
3.8k
views
Comment:
Comment: edgeR, Pseudobulk scRNA-seq
13 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.2k
views
Comment:
Comment: Limma: is it necessary to log-transform the data?
12 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.2k
views
Comment:
Comment: Limma: is it necessary to log-transform the data?
13 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
2.1k
views
Comment:
Comment: Limma for batch effect correction
14 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
Gordon Smyth
★ 7.2k
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