Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
2
votes
0
replies
178
views
Answer:
Answer: RNAseq coverage vs depth for transcript isoform expression?
9 hours ago by
Gordon Smyth
★ 7.2k
5
votes
1
reply
244
views
Answer:
Answer: EdgeR - relationship between logFC and coefficients
9 days ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
486
views
Answer:
Answer: Design matrix Differential expression analysis
15 days ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.4k
views
Answer:
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
20 days ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
451
views
Answer:
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
22 days ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
299
views
Answer:
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
22 days ago by
Gordon Smyth
★ 7.2k
4
votes
1
reply
359
views
Answer:
Answer: How to use limma to find differentially expressed genes in response to a continu
22 days ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
304
views
Answer:
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
29 days ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
437
views
Answer:
Answer: differential gene expression analysis when not all samples have an untreated cou
4 weeks ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
272
views
Answer:
Answer: Choosing an FC Threshold
7 weeks ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
498
views
Answer:
Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
8 weeks ago by
Gordon Smyth
★ 7.2k
3
votes
3
replies
480
views
Answer:
Answer: Differential express genes in imbalance groups
8 weeks ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
716
views
Answer:
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
11 weeks ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.3k
views
Answer:
Answer: MA graphs for EdgeR and Voom vary
11 weeks ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
742
views
Answer:
Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
11 weeks ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
502
views
Answer:
Answer: Does the order of the batch variable matter in Limma design matrix?
8 weeks ago by
Gordon Smyth
★ 7.2k
6
votes
1
reply
496
views
Answer:
Answer: Bayesian Differential Expression
3 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
942
views
Answer:
Answer: EdgeR: upregulated with respect to what group?
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.3k
views
Answer:
Answer: Is there a program to average read counts from technical replicates?
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
920
views
Answer:
Answer: How do I work out which condition the genes are down-regulated in?
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.6k
views
Answer:
Answer: positive and negative Fold Change glmLRT test
3 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
755
views
Answer:
Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
3 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
1.1k
views
Answer:
Answer: Shrink logFC values after edgeR
3 months ago by
Gordon Smyth
★ 7.2k
3
votes
1
reply
531
views
Answer:
Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
626
views
Answer:
Answer: Differential RNA editing using edgeR
4 months ago by
Gordon Smyth
★ 7.2k
1
vote
2
replies
1.7k
views
Answer:
Answer: how to test for differential expression in samples where a global increase in ge
5 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
1.6k
views
Answer:
Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
5 months ago by
Gordon Smyth
★ 7.2k
3
votes
1
reply
713
views
Answer:
Answer: Microarray data analysis with and without contrast
6 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
6.7k
views
Answer:
Answer: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.5k
views
Answer:
Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
6 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
822
views
Answer:
Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
8 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
2.1k
views
Answer:
Answer: Extracting Residuals from Differential Expression Model
8 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
630
views
Answer:
Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
9 months ago by
Gordon Smyth
★ 7.2k
0
votes
2
replies
1.2k
views
Answer:
Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
10 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.4k
views
Answer:
Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
10 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.7k
views
Answer:
Answer: bar chart to show a p value of 0
10 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.4k
views
Answer:
Answer: How do I correctly format my limma/eBayes code?
11 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.4k
views
Answer:
Answer: How do I run DE for TPM values (not CPM)?
11 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.8k
views
Answer:
Answer: Limma returned only positive logFC values
11 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
831
views
Answer:
Answer: coef /makeContrasts very different results
12 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.1k
views
Answer:
Answer: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
13 months ago by
Gordon Smyth
★ 7.2k
5
votes
1
reply
1.4k
views
Answer:
Answer: LIMMA: where to find the ANOVA?
13 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
3.8k
views
Answer:
Answer: edgeR, Pseudobulk scRNA-seq
13 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
620
views
Answer:
Answer: Is it possible to use limma to simultaneously analyze RNA-seq and gene expressio
13 months ago by
Gordon Smyth
★ 7.2k
8
votes
1
reply
4.5k
views
Answer:
Answer: What are the advantages of using the T2T as a reference vs GRCh38 today?
13 months ago by
Gordon Smyth
★ 7.2k
4
votes
1
reply
2.2k
views
Answer:
Answer: Limma: is it necessary to log-transform the data?
12 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
574
views
Answer:
Answer: "align" in rsubread only reading 1 out of 6 of my input files
13 months ago by
Gordon Smyth
★ 7.2k
4
votes
0
replies
1.1k
views
Answer:
Answer: RNA-seq analysis without replicates
13 months ago by
Gordon Smyth
★ 7.2k
7
votes
1
reply
987
views
Answer:
Answer: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by
Gordon Smyth
★ 7.2k
3
votes
0
replies
646
views
Answer:
Answer: How to Merge RNA Replicates
13 months ago by
Gordon Smyth
★ 7.2k
288 results • Page
1 of 6
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6