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271
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Answer: Answer: RNAseq coverage vs depth for transcript isoform expression?
8 days ago by Gordon Smyth ★ 7.2k
5
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1
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274
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Answer: Answer: EdgeR - relationship between logFC and coefficients
17 days ago by Gordon Smyth ★ 7.2k
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511
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Comment: Comment: Design matrix Differential expression analysis
20 days ago by Gordon Smyth ★ 7.2k
2
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1
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511
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Answer: Answer: Design matrix Differential expression analysis
23 days ago by Gordon Smyth ★ 7.2k
0
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1
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475
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Comment: Comment: Limma Analysis Agilent Microarray Data (GPL1708)
28 days ago by Gordon Smyth ★ 7.2k
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0
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1.4k
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Answer: Answer: Differential Expression using Isoseq-supplemented reference transcriptome
28 days ago by Gordon Smyth ★ 7.2k
1
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475
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Answer: Answer: Limma Analysis Agilent Microarray Data (GPL1708)
4 weeks ago by Gordon Smyth ★ 7.2k
0
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1
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320
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Answer: Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
4 weeks ago by Gordon Smyth ★ 7.2k
4
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1
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374
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Answer: Answer: How to use limma to find differentially expressed genes in response to a continu
4 weeks ago by Gordon Smyth ★ 7.2k
0
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0
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293
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Comment: Comment: permutation test in edgeR
5 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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466
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Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
5 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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314
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Answer: Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
5 weeks ago by Gordon Smyth ★ 7.2k
2
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1
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453
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Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
5 weeks ago by Gordon Smyth ★ 7.2k
1
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1
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454
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
5 weeks ago by Gordon Smyth ★ 7.2k
2
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0
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284
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Answer: Answer: Choosing an FC Threshold
8 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
9 weeks ago by Gordon Smyth ★ 7.2k
0
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1
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518
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
9 weeks ago by Gordon Smyth ★ 7.2k
0
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1
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518
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
9 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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506
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Comment: Comment: Differential express genes in imbalance groups
9 weeks ago by Gordon Smyth ★ 7.2k
3
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3
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506
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Answer: Answer: Differential express genes in imbalance groups
9 weeks ago by Gordon Smyth ★ 7.2k
0
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0
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232
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Comment: Comment: Computing mid parent value for DE analysis
11 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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747
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
12 weeks ago by Gordon Smyth ★ 7.2k
1
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0
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1.3k
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Answer: Answer: MA graphs for EdgeR and Voom vary
12 weeks ago by Gordon Smyth ★ 7.2k
2
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0
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
12 weeks ago by Gordon Smyth ★ 7.2k
2
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0
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749
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
12 weeks ago by Gordon Smyth ★ 7.2k
0
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0
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530
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
12 weeks ago by Gordon Smyth ★ 7.2k
0
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0
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3.9k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
12 weeks ago by Gordon Smyth ★ 7.2k
1
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1
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530
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
9 weeks ago by Gordon Smyth ★ 7.2k
6
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1
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499
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Answer: Answer: Bayesian Differential Expression
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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487
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Comment: Comment: filtering lowly expressed reads
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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258
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Comment: Comment: Design matrix after RUVg correction
3 months ago by Gordon Smyth ★ 7.2k
2
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0
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2.9k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
3 months ago by Gordon Smyth ★ 7.2k
1
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0
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958
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Answer: Answer: EdgeR: upregulated with respect to what group?
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.3k
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Answer: Answer: Is there a program to average read counts from technical replicates?
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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930
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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930
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.6k
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Answer: Answer: positive and negative Fold Change glmLRT test
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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763
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
3 months ago by Gordon Smyth ★ 7.2k
2
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1
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1.1k
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Answer: Answer: Shrink logFC values after edgeR
3 months ago by Gordon Smyth ★ 7.2k
1
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1
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557
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.2k
3
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1
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557
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.2k
0
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0
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329
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
4 months ago by Gordon Smyth ★ 7.2k
1
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0
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299
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Comment: Comment: Gene expression of microarray data
4 months ago by Gordon Smyth ★ 7.2k
0
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1
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637
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Comment: Comment: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.2k
2
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1
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637
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Answer: Answer: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.2k
0
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1
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588
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Comment: Comment: how to start DEG analysis after featurecounts
4 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
23 days ago by Gordon Smyth ★ 7.2k
0
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1
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1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
0
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0
replies
1.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
0
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1
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1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
507 results • Page 1 of 11
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