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355
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Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
5 days ago by Juke34 8.6k
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355
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Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
6 days ago by Juke34 8.6k
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380
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Answer: Answer: Assume "yes" as the answer to any prompts with bioconda
4 weeks ago by Juke34 8.6k
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362
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Comment: Comment: Why are gene models from JGI non-sense when using AGAT to to extract proteins?
7 weeks ago by Juke34 8.6k
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507
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Answer: Answer: Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
8 weeks ago by Juke34 8.6k
3
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293
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Answer: Answer: why there is an asterisk symbol at the end of each proteins sequences offasta fi
8 weeks ago by Juke34 8.6k
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9.8k
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Comment: Comment: Create de novo repeat library
9 weeks ago by Juke34 8.6k
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796
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Answer: Answer: Intersect gene IDs list and GFF3 to get the annotation.
9 weeks ago by Juke34 8.6k
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423
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Answer: Answer: How can I get the sequences of the first 20nt of introns and the last 250nt of i
12 weeks ago by Juke34 8.6k
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0
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975
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Comment: Comment: Trying to wrap my head around Illumina paired end sequencing
4 months ago by Juke34 8.6k
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1
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672
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Comment: Comment: Gemoma error with gff file
4 months ago by Juke34 8.6k
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1.8k
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Comment: Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
7 months ago by Juke34 8.6k
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1
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1.8k
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Comment: Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
7 months ago by Juke34 8.6k
1
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1
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1.8k
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Comment: Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
7 months ago by Juke34 8.6k
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1
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1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by Juke34 8.6k
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1
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1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by Juke34 8.6k
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1
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924
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Answer: Answer: Adapters finder
7 months ago by Juke34 8.6k
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0
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807
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Comment: Comment: Converting GFF to GTF
7 months ago by Juke34 8.6k
2
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1
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581
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Answer: Answer: Fastp
7 months ago by Juke34 8.6k
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1
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665
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Comment: Comment: Samtools mpileup for RNA Editing levels generating empty output file
7 months ago by Juke34 8.6k
1
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0
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337
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Comment: Comment: Luciferase T7 Control GTF file
7 months ago by Juke34 8.6k
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1
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1.3k
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Comment: Comment: Getting the overlap between two GTF files
7 months ago by Juke34 8.6k
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1
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921
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Comment: Comment: how to identify uniq genes between two gff files.
7 months ago by Juke34 8.6k
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1
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921
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Answer: Answer: how to identify uniq genes between two gff files.
7 months ago by Juke34 8.6k
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1
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1.0k
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Answer: Answer: How to check RNAseq support for annotated genes?
8 months ago by Juke34 8.6k
1
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1
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1.8k
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Answer: Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
8 months ago by Juke34 8.6k
2
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2
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3.6k
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Answer: Answer: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
8 months ago by Juke34 8.6k
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1
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22k
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Comment: Comment: Is there a tool that sorts gtf files?
8 months ago by Juke34 8.6k
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0
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6.0k
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Answer: Answer: Convert bed12 to GFF
8 months ago by Juke34 8.6k
2
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0
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543
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Answer: Answer: MAKER: how to use RNAseq data to assist annotation?
8 months ago by Juke34 8.6k
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0
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475
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Comment: Comment: How to set weight for merge legacy annotations
8 months ago by Juke34 8.6k
3
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1
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658
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Tutorial: Coordinate Systems and genomic variant description
coordinate-system HGVS normalization VCF
updated 9 months ago by 43k • written 9 months ago by 8.6k
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1.1k
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Answer: Answer: The nightmare of coordinate systems
9 months ago by Juke34 8.6k
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1
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1.1k
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Answer: Answer: Counting RNA-seq reads for more features than GTF files contain
9 months ago by Juke34 8.6k
1
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0
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903
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Comment: Comment: Contig order rearranged agat
10 months ago by Juke34 8.6k
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1
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903
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Comment: Comment: Contig order rearranged agat
10 months ago by Juke34 8.6k
1
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1
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875
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Comment: Comment: gff3ToGenePred
10 months ago by Juke34 8.6k
2
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0
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1.1k
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Comment: Comment: adding features to gtf file using agat tool function
10 months ago by Juke34 8.6k
1
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1
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875
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Comment: Comment: gff3ToGenePred
10 months ago by Juke34 8.6k
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0
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1.2k
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Comment: Comment: error installing SAMtools and bamtools
10 months ago by Juke34 8.6k
4
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2
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1.1k
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Answer: Answer: adding features to gtf file using agat tool function
10 months ago by Juke34 8.6k
2
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3
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3.4k
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Comment: Comment: How to add "transcript" feature to a gtf file?
10 months ago by Juke34 8.6k
2
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1
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3.4k
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Comment: Comment: How to add "transcript" feature to a gtf file?
10 months ago by Juke34 8.6k
1
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1
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3.4k
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Comment: Comment: How to add "transcript" feature to a gtf file?
10 months ago by Juke34 8.6k
2
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1
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3.4k
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Comment: Comment: How to add "transcript" feature to a gtf file?
10 months ago by Juke34 8.6k
2
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1
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960
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Answer: Answer: gff3 to gtf
11 months ago by Juke34 8.6k
0
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0
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878
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Comment: Comment: Rename GFF3 File
11 months ago by Juke34 8.6k
1
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1
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960
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Comment: Comment: gff3 to gtf
11 months ago by Juke34 8.6k
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1.7k
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Comment: Comment: How to extract summary statistics from GFF3 /GTF file?
12 months ago by Juke34 8.6k
1
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1
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1.7k
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Comment: Comment: How to extract summary statistics from GFF3 /GTF file?
12 months ago by Juke34 8.6k
964 results • Page 1 of 20
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