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Reference panel of normals for ensembl named refgenome
Mutect2
20 days ago by gernophil ▴ 80
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1
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2.6k
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Comment: Comment: Extract gRNA sequence using cutadapt
4 weeks ago by gernophil ▴ 80
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1
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2.6k
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Comment: Comment: Extract gRNA sequence using cutadapt
4 weeks ago by gernophil ▴ 80
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1
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2.6k
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Comment: Comment: Extract gRNA sequence using cutadapt
4 weeks ago by gernophil ▴ 80
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1
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2.6k
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Comment: Comment: Extract gRNA sequence using cutadapt
4 weeks ago by gernophil ▴ 80
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1
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1.2k
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Comment: Comment: Why multiple SYMBOLS, Consequences... for Variant Effect Predictor (VEP)
9 weeks ago by gernophil ▴ 80
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1
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1.2k
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Comment: Comment: Why multiple SYMBOLS, Consequences... for Variant Effect Predictor (VEP)
9 weeks ago by gernophil ▴ 80
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0
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739
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Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
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1
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739
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Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
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1
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739
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Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
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0
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739
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Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
0
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1
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739
views
Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
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0
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739
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Comment: Comment: BWA MEM different synthax on linux (bash) and macOS (zsh)
12 weeks ago by gernophil ▴ 80
0
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12
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739
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BWA MEM different synthax on linux (bash) and macOS (zsh)
MEM BWA
12 weeks ago by gernophil ▴ 80
0
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0
replies
156
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Tutorial for COSMIC? Any way to calculate VAF?
COSMIC
3 months ago by gernophil ▴ 80
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0
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449
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Comment: Comment: Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a
3 months ago by gernophil ▴ 80
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3
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449
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Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a variant?
VCF
updated 3 months ago by 4.2k • written 3 months ago by ▴ 80
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0
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498
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Comment: Comment: Packages don't update, but no error or warning is thrown
4 months ago by gernophil ▴ 80
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1
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498
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Comment: Comment: Bioconductor packages don't update without an error
4 months ago by gernophil ▴ 80
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4
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498
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Packages don't update, but no error or warning is thrown
Bioconductor
4 months ago by gernophil ▴ 80
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1
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442
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Comment: Comment: VEP - select consequences version
4 months ago by gernophil ▴ 80
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0
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6.6k
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Comment: Comment: fasterq-dump quit with error code 3
4 months ago by gernophil ▴ 80
2
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3
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442
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VEP - select consequences version
VEP
updated 4 months ago by 142k • written 4 months ago by ▴ 80
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0
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30k
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Comment: Comment: Amino Acid Change To Genomic Location
4 months ago by gernophil ▴ 80
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1
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655
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Comment: Comment: Is the USCS hg38.chromAlias.txt file availble in a sorted fashion?
5 months ago by gernophil ▴ 80
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0
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655
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Comment: Comment: Is the USCS hg38.chromAlias.txt file availble in a sorted fashion?
updated 5 months ago by 44k • written 5 months ago by ▴ 80
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5
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655
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Is the USCS hg38.chromAlias.txt file availble in a sorted fashion?
chromnames
updated 5 months ago by 44k • written 5 months ago by ▴ 80
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0
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1.4k
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Comment: Comment: Problem with Mamba
5 months ago by gernophil ▴ 80
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1
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1.4k
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Comment: Comment: Problem with Mamba
5 months ago by gernophil ▴ 80
1
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1
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1.4k
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Comment: Comment: Problem with Mamba
5 months ago by gernophil ▴ 80
1
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1
reply
1.3k
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Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
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0
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1.3k
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Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
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1
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505
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Comment: Comment: keep read association with mpileup
5 months ago by gernophil ▴ 80
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1
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1.3k
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Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
0
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1
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505
views
Comment: Comment: keep read association with mpileup
5 months ago by gernophil ▴ 80
0
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1
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1.3k
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Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
1
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4
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505
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keep read association with mpileup
mpileup samtools
updated 5 months ago by 44k • written 5 months ago by ▴ 80
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1
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1.3k
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Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
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0
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1.3k
views
Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
0
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1
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1.3k
views
Comment: Comment: extract sequence from genome by region
5 months ago by gernophil ▴ 80
3
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19
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1.3k
views
extract sequence from genome by region
fasta
updated 5 months ago by 44k • written 5 months ago by ▴ 80
2
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3
replies
1.1k
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Extracting exons using GenomicFeatures is different from manual extraction
R GenomicFeatures
updated 7 months ago by ▴ 120 • written 11 months ago by ▴ 80
1
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1
reply
629
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CHOPCHOP command line
sgRNA chopchop
updated 9 months ago by 142k • written 15 months ago by ▴ 80
0
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0
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34k
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Comment: Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
11 months ago by gernophil ▴ 80
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0
replies
1.1k
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Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
11 months ago by gernophil ▴ 80
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1
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1.1k
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Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
11 months ago by gernophil ▴ 80
0
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1
reply
1.1k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
11 months ago by gernophil ▴ 80
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1
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1.1k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
11 months ago by gernophil ▴ 80
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8
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1.1k
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Why did GENCODE change the main annotation file from Comprehensive to Basic
GENCODE
11 months ago by gernophil ▴ 80
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0
replies
1.1k
views
Answer: Answer: Extracting exons using GenomicFeatures is different from manual extraction
11 months ago by gernophil ▴ 80
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