This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Tool: ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases.

Standalone program to visualize enrichment patterns of DNA-interacting proteins at functionally important regions based on next-generation sequencing data:

http://www.ncbi.nlm.nih.gov/pubmed/24735413

--Genohub

ngs.plot ngs-data visualize
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updated by Ram Ram • written by support support

I don't want to discourage people from submitting tools and publications but what would work best is a little bit more context and personal experiences.

  1. has the submitter tried the tool,
  2. does it really do what it claims to
  3. is it feasible to install it
  4. why is it better than an alternative
  5. etc
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updated by Ram Ram • written by Istvan Albert Istvan Albert

1 answer

Looks like a Galaxy tool to make the aggregate profiles and heatmaps we made for various transcription factors in our 2012 Nature paper.

The indexing aspect is interesting, but we may have an answer to that in the coming months that fixes some of the downsides with that style of indexing and compression.

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updated by Ram Ram • written by Alex Reynolds Alex Reynolds

What is the name of that galaxy (specific) tool?

thanks

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written by Chirag Nepal Chirag Nepal

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