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blast output for FASTA (aligned sequences) to get organism name

Hi,

I want to get the organism name from blast output (FASTA (aligned sequences)) for the specific protein.

I am a beginner in python. Please help me to write the script for getting organism name in biopython.

Is there anyone who can help me?

regards,

Skarim

blast
• 3,600 views • link
updated by Biostar Biostar • written by s.m.karim • s.m.karim

Hey did you succeed in doing this? i'd like to see that script. I need to do exactly this for a school project but I have no idea how to do it.

Regards,

Jorn.

• 1 views • link
written by jornvanderwal • jornvanderwal

1 answer

Given you have setup taxdb, you can use the sscinames tag in tabular output of ≥ blast 2.2.28+.

• 0 views • link
updated by Ram Ram • written by 5heikki 5heikki

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