Tutorial: Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

This paper is an excellent resource for all aspects of ChIP-seq data analysis. The authors explain not only the details of each step, but also popular software used and major challenges faced.

http://epigenie.com

Bailey T, et al.(2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326

chip-seq peak-calling sequencing

• 3,434 views • link

updated 3.4 years ago by Ram

• written 12.3 years ago by dnaseiseq

I have changed the title to match that of the paper.

• 0 views • link

written 12.3 years ago by Istvan Albert

0 answers

No answers yet.

More posts like this

Job: Postdoc Position in non-coding RNA & R-loop Epigenetics at the Institute of Molecular Biology …
written 4.8 years ago by IMB postdoc programme •

**The Niehrs laboratory** studies regulation of DNA methylation, which plays important roles in development & disease. We have recently demonstrated a role for long non-coding …
Database for C. elegans TFBS
written 10.8 years ago by pengchy

Hi, Is there a database store the TFBS of C. elegans derived from ChIP-Seq or other experimental methods? Currently, I have the following one methods: …
Quality metrics of ChIP-seq BAM files
written 11.0 years ago by nash.claire

Hi all, I'm a real beginner in the field of ChIP-seq analysis and bioinformatics in general (so please be patient) and wondered if you could …
Tool: Human NGS Cancer Data for tool development, algorithm benchmarking, teaching, pipeline evalua…
written 11.0 years ago by Malachi Griffith

We recently published a paper and made available a comprehensive human NGS cancer dataset for tool development, algorithm benchmarking, teaching, pipeline evaluation, etc. This data …
Forum: Interpretation Of Genomic Variants Using A Unified Biological Network Approach
written 13.3 years ago by AndreiR

Just sharing a interesting paper. > Here we integrate the diverse modes of gene interactions (regulatory, genetic, phosphorylation, signaling, metabolic and physical protein-protein interactions) to …
Forum: Plos Comp Biology Commentary On "Taking The Right Steps To Become A Successful Principal Inv…
written 13.5 years ago by Casey Bergman

PLOS Comp Bio has just published an interesting piece with loads of good tips for those on the academic path, regardless of your career stage, …
Tool: Gem: Genome Wide Event Finding And Motif Discovery
written 13.7 years ago by Ian

**GEM: Genome wide Event finding and Motif discovery** ***Website***: http://cgs.csail.mit.edu/gem/ ***Citation***: [High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial …
Forum: Useful Resource To Self-Study Bioinformatics
written 13.8 years ago by Hranjeev

The below paper outlines a very comprehensive plan for studying bioinformatics especially in self-study or as class supplement. Several suggestions has been made on the …
Tool: Segemehl: A Fast One-Stop-Shop Mapping Tool
written 13.9 years ago by David Langenberger

**segemehl** is a software to map sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions …
Tutorial: Metagenomics Review Papers
written 13.9 years ago by Istvan Albert

Review papers on the topic of metagenomics ## Special Issues Edit (01/13): A special issue in Briefings in Bioinformatics: [**Bioinformatics approaches and tools for metagenomic …