not able to get the actual information of VCF file from vcf-stats
Hi all,
I am not able to get the information from vcftools-stats tools,please let me know how to get the output in the tabular format so I can read it.
some example command is
perl vcf-stats test.vcf
Thanks
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By default, vcf-stats outputs the stats as a Perl Data::Dumper string.
If you want a collection of text files with the statistics, you need to provide a output file prefix with -p.
eg. perl vcf-stats -p mystats/test test.vcf
Then look at the files in the mystats/ folder.
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What is the output that you get and how would you like it to be formatted instead?