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downloading pdbids and chains of heterodimers

I would like to get a nonredundant set of heterodimers (30% seq.identity) with PDB ids and its corresponding chains. Is it possible to get with pdbePISA? I tried , but I couldn't find. Your suggestions would be appreciated.

protein pdb
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written by anbugomez • anbugomez

2 answers

Try the new stoichiometry drilldown at www.rcsb.org . Click on 99293 at the top of the page, then "Protein Stoichiometry"-> Heteromer->Hetero-2-mer , then "Show only representatives at 30%"

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written by andreas.prlic andreas.prlic

Use 3DComplex. Otherwise, use the advanced search of RCSB PDB and limit your query accordingly.

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updated by Ram Ram • written by João Rodrigues João Rodrigues

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