More posts like this
-
all novel transcripts' exons locate on same chromosomes
written by wenhui •I am using tophat2/cufflinks/cuffmerge to precess my data. When I checked the results from cufflinks, I found all novel transcripts' exons locate on same chromosomes. …
-
D-value instead of P-value in large sample size
written by M KThere are many recent discussions about using p-value in the large sample size (i.e 10,000). Most of these discussions say that p-value give a significant …
-
How to know if the the antisense is real (novel) based on the read count form it using IGV?
written by M K<p>I have posted question similar to this, but I didn't get any clear answer about it "How to know if the the antisense is real …
-
Different results from Different Cufflinks versions
written by siddharth.sethi5Hi, I have noticed that the newer versions of Cufflinks are giving much more significant differentially expressed genes. I am updating my pipeline, so I …
-
How To Run Rna-Seqc Program Under Windows?
written by M K<p>I downloaded RNA-SeQC and I tried to run it under windows but it doesn't respond. Any idea about this problem.</p>
-
How To Analyze And Interpret Cuffilinks Results Without Using Igv ?
written by M K<p>I used Cufflinks and I got the following files in the output folder. genes.fpkm_tracking isoforms.fpkm_tracking skipped.gtf transcripts.gtf</p> <p>So what is the best way to interpret …
-
Cufflinks Crashes Because Of Mitochondrial Rna Abundance
written by M K<p>Hi All,</p> <p>When I tried to run Cufflinks it was crashed, and I found that because of Mitochondrial RNA abundance that mapped to human genome. …
-
How To Identify Antisense In Rna Seq Analysis?
written by M K<p>I am new in bioinformatics and I am going to identify antisense in RNAseq, and I did the following steps to my raw rnaseqdata (5 …
-
How To Become A (Protein) Bioinformatician? - Skills
written by K<p>Hi all.</p> <p>I am a biotechnologist who in the final part of my Ph.D. have become involved (and quite interested!) in the use of bioinformatics …
-
Cuffdiff : Time Series And Cummerbund Analysis
written by Abhi<p>Hi Guys</p> <p>I would like to know what the --time-series option in cuffidff does and how it is different from standard differential analysis cufflinks does. …
That would depend entirely on the purpose of the experiment.