Hi. I've run across this same problem multiple times and cannot locate a suitable alternative. I used to be able to pull genotypes from Hapmap or 1KG and visualize LD in Haploview with an infotrack. That no longer seems to work. I want to be able to see LD and a SNP's genomic position at the same time. I use LocusZoom et al. for visualizing GWAS results, but I don't think it will work for genotypic data. Has anyone found a way around this problem? Thank you!