This is a test version of Biostars. For the public version, visit https://www.biostars.org.
sc.pl.heatmap absolute or relative expression?

Hi all,

I am wondering (and can't find this anywhere) if the expression values plotted with scanpy plot heatmap (sc.pl.heatmap) are absolute value or relative?

I think it is relative because when I plot a given gene that is strongly expressed the other genes signals kind of disappear but I am just checking.

Thanks a bunch!

scanpy scrna-seq expression heatmap

It will have negative values if relative.

0 answers

No answers yet.

Log in to answer this question.