mismatch sites from GAM/GAF
I would like to know if mismatch sites can be extracted directly from GAM/GAF files.
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colindaven
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zhengluo •
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zhengluo •
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I don't think this is possible yet. Not many SNP callers are available for pangenomes. I think most will work in the VCF reference space after vg surject.
See https://github.com/colindaven/awesome-pangenomes