mismatch sites from GAM/GAF

I would like to know if mismatch sites can be extracted directly from GAM/GAF files.

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updated 6 months ago by colindaven 844 • | written 6 months ago by zhengluo 0

I don't think this is possible yet. Not many SNP callers are available for pangenomes. I think most will work in the VCF reference space after vg surject.

See https://github.com/colindaven/awesome-pangenomes

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written 6 months ago by colindaven 844

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No answers yet.

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