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Merging .gam files
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14 months ago

Can anyone point me towards a method to merge gam files that are created by using ' vg map ' to map illumina reads to my genome graph? I would like to be able to map all of the sequencing runs separately and then merge the output (something like samtools merge but for a gam) so that I can call SVs for each sample.

Thanks.

vg gam • 375 views
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Entering edit mode
13 months ago
glenn.hickey ▴ 240

GAM files can be combined with cat. Note that vg call can only genotype one sample at a time, though.

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