More posts like this
-
How to test the similarity of two gene expression profiles
written by htchd 2I have a gene expression data from RNAseq, and want to test if it match(or its similarity to) any existing gene expression profile in the …
-
Filtering VCF files
written by chrisgr 2Hi, I managed to align some fastq files and got to the point of raw VCF files. Now I would like to filter them based …
-
I have gene lists with fold changes/FDR from RNA-seq, what's the possible downstream analysis I can…
written by htchd 2I have gene lists with fold changes/FDR from RNA-seq, what's the possible downstream analysis I can perform? What are the common packages to do the …
-
fastq files from pair-end sequencing, for 4c-seq analysis, How to analyze ?
written by htchd 2Hi, I have fastq files from pair-end sequencing, for 4c-seq/Chip-seq analysis. How to analyze it? The data contains R1 and R2 fastq files. Should I …
-
How to interpret the output of gatk?
written by Laven9 0Recently I run Gatk-Mutect2 to call the somatic mutations in my data, but I get a lot more (too much and seems abnormal) mutations than …
-
Extract number of SNPs for any given gene
written by Matt En 3What is the easiest way to count the number of SNPs in humans (and distinguish them by the standard NCBI filters of "missense mutations" / …
-
Suggested pipelines for finding somatic mutations using RNAseq in normal and tumor cells
written by Sharon 61Hi All I am looking for pipelines to find somatic mutations in tumor and normal cells. Should I use GATK pipeline for RNAseq variant calling …
-
RNASeq TCGA data
written by elizabethR 7Hey I have been analysing some of the RNASeq data from TCGA. I have been using total RNA files from RNASeqV2 on the advice of …
-
the question about new TCGA Rnaseq data
written by pxf109 2I find people often use rsem normalized result of TCGA Rnaseq data in DCC server, but i can't find this data in the TCGA new …
-
Somatic Mutations In Microrna Genes
written by nro 0<p>HI,</p> <p>I have matched tumor-normal samples for targeted sequencing of miRNAs. I wanted to know what are the best filters that I can use to …
One line questions are never a good way to describe what you are trying to do and without that information you are not likely to get any usable answers.
See--> [[ Please read before posting a question ::: How To Ask A Good Question ]]