the question about new TCGA Rnaseq data
I find people often use rsem normalized result of TCGA Rnaseq data in DCC server, but i can't find this data in the TCGA new server any more. Now, they only provide HTSeq-FPKM, HTSeq-FPKM-UQ and HTSeq-Counts data. Is that mean one of these three kind can instead rsem data? If not, how can i get rsem value from this three kind data? Thank you
• 2,925 views
•
link
updated
by
vakul.mohanty
•
written
by
pxf109 •
•
written
by
pxf109 •
2 answers
FireHose is a good place to get rsem normalized result of TCGA data.
• 0 views
•
link
written
by
JackieMe •
the legacy archive at GDC (https://gdc-portal.nci.nih.gov/) might also have the data your are looking for
• 0 views
•
link
written
by
vakul.mohanty
Log in to answer this question.
More posts like this
-
Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM, FPKM-UQ
written by mario.red8976
-
What are good packages to find Differentially Expressed Genes from RNASeq RSEM and log2(x+1) transf…
written by J. Smith
-
problem for 2 different normalization methods in train and test data set
written by modarzi
-
TCGA FPKM-UQ method theory
written by zx12as3420 •
-
Can PAM50 classification performed on TCGA-BRCA RNASeq RSEM data be used with RNASeq FPKM normalize…
written by manali.rupji •
-
Can I use TCGA FPKM-UQ values directly to compare across samples without any preprocessing?
written by robles.daniela
-
Question: Rna Raw Count and Gene expression correlation
written by salvatore.digiorgio •
-
What preprocessing steps are required for the different TCGA/GDC Gene Expression Data (Counts, FPKM…
written by cindy.perscheid
-
Which data can used to analyze the gene expression in TCGA
written by pxf109 •
-
TMM - Normalized FPKM values for RNASeq data ?
written by gangireddy
