Discrepancies calculatin average coverage with Bedtools and Mosdepth
Hi,
I would like to calculate the average coverage of specific genomic regions. However I get different results with mosdepth and bedtools:
bedtools
bedtools coverage -a u1.narrowPeak -b u1_bwa.bam -mean > MeanCoverageu1.bedgraph
chrY 57216300 57217350 u1_1 4 4105 . 0 0 0 825 18933.2226562
mosdepth
mosdepth -t 8 -n --by u1.narrowPeak u1_mosdepth_output u1_bwa.bam
chrY 57216300 57217350 u1_1 1 5015.89
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Pierre Lindenbaum
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María José •
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María José •
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