Hello!
I want to ask about your opinions on NextFlow or Snakemake. I'm not in a bioinformatics lab, so I've learned to analyse data using every software needed for each step. I construct my pipeline step by step; for instance, I use Fastqc for QC, trim galore for trimming, and so on.
However, when looking for job opportunities in bioinformatics, they ask for experience in Nextflow or Snakemake to analyse data. I did an ATACseq analysis as an experiment by building my pipeline and also using Nextflow. Still, I would like to know more about what your opinions and points of view are about the pros and cons of using NextFlow or Snakemake or creating self-made pipelines to analyse data.
Thanks!
Thanks everyone for your quick replies! I'm definitely giving it another try, as it seems to be the best approach to improve my analyses!