Difference Between Checkpoint File And Pssm In Blast
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
how to use circos plot to plot euchromation and heterochromatin
written by szp770 •Hi, as said in the title, I want to generate a circos plot like this: ![enter image description here][1] What file do I need to …
-
Predict frameshift mutation consequence tool - causing a premature stop codon downstream
written by vntt2407 •As the title said, I have a frameshift mutation identified and for it I would like to see if it causes a premature stop codon …
-
gtf file for htseq count
written by Tawfiq •In htseq count we need the .gtf file and in the tutorial they said we cannot use one from UCSC, is any one know the …
-
How To Stores The Query And Frequency Count Ratio Matrix In A File In Blast+
written by estellequan •<p>The command to generate a he query and frequency count ratio matrix using nr might look as follows: </p> <p>blastpgp -i test1.fa -d nr -h …
-
How To Acquire A Pssm Of A Protein Fasta With Ncbi-Blast-2.2.29+
written by estellequan •<p>I am a newcomer to ncbi-blast-2.2.29+. Previously, I had been using blastpgp to gain PSSM. In blastpgp, to gain a PSSM of a protein fasta, …
-
Why Aren'T Guide Trees (Necessarily) Phylogenetic Trees?
written by Click downvote<p>As the title says...</p>
-
Looking For A Way To Count Total Length Of Regions Of Bed File
written by Yunfei Li<p>as title, there is no overlap region in bed file. Thanks</p>
-
Trim The Fasta Title
written by KJ Lim •<p>Good day. </p> <p>I parsed title of desire sequences from a Fasta file. The title of sequences are rather long, thus, I want to trim …
-
How To Download The Ko Number In A Specific Pathway Of Kegg
written by Shuixia100 •<p>Hi there,</p> <p>Just like the title said. Does any one know where shall I download it. I cannot find any download link in KEGG server.</p> …
-
Where Can I Find Information About Strength And Weakness Of Variant Effect Predictors (Sift, Poly P…
written by jessada •<p>As title, I need to get that information in my report. Are there any benchmarks or articles that discuss about this?</p>
are you using the web PSI-Blast, or the command line version? In any case, the checkpoint file and the PSSM are the same thing.