biomart for rice MSU ids
Hi
I am trying to retrieve the information of list of genes using MSU id but can't see filter for MSU id. Can someone suggest?
MSU id: LOC_Os05g45450
biomart
ensembl
gramene
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link
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Ram
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Tenacious aim •
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As I recall MSU rice project moved here: http://rice.uga.edu/analyses_search_locus.shtml (this site is not running
httpsprotocol so it may take a while to come up in your browser).