how to use pilon
hello, i am confused with what should exactly be used in the --genome and --frags parameter suppose I have a sequence taken from SRA then how do I continue with this.
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Arup Ghosh
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vasudhapai •
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vasudhapai •
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https://github.com/broadinstitute/pilon
Start with quality control then alignment of the raw reads.
https://github.com/broadinstitute/pilon/wiki/Requirements-&-Usage