error in determining minimum contigs in Velvet
Does anyone know how I can resolve this error when determining the minimum number of contigs in Velvet?
Is this the command I'm using? I want them to have a minimum size of 1000 bp
velveth results_velvet 31 -shortPaired -fastq.gz -separate -min_contig_lgth 1000 Bacteria_G4_1.fastq.gz Bacteria_G4_2.fastq.gz
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It helps a lot when you include the error message you are getting. In this case, the error is likely because
-min_contig_lgthis not a parameter ofvelveth. It is a parameter ofvelvetg.I understand, thanks for the answer!