This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to download taxonomy/lineage/taxonid information for JGI genome organism codes? (e.g., MycoCosm and PhycoCosm)

I have a list of organism codes from MycoCosm. For example, the following:

Aalte1
Aaoar1
Abobi1
Abobie1

How can I get the taxonomy and lineage information for these organisms?

Is there a way to download metadata tables that contain taxonomy/lineage information for MycoCosm organisms?

Ideally, I would get the NCBI taxonomic identifier for each of these organisms.

jgi genomics phycocosm mycocosm taxonomy

1 answer

Log in to answer this question.