Regenie to get burden
Hi I'd like to compute the burden, meaning the number of SNPs with MAF<0.01 within a gene using Regenie. I AM NOT interested in doing an association test, so I guess I have to provide a dummy phenotype file.
I am interested in getting for each person whether it has 0 variants, heterozygous variants or homozygous variants. I have been struggling to find the correct flag for producing such output.
Any help would be appreciated.
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Ram
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_quantum_girl_ •
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