Issue VEP installation MacOS
Hi,
I'm trying to install VEP on Mac. I've tried on the Anaconda Navigator, but I couldn't install. I also tried through the terminal, but also in this way I can't install. The last error that I've got is:
User
cram/cram_io.c:61:10: fatal error: 'lzma.h' file not found
#include <lzma.h>
1 error generated.
make: *** [cram/cram_io.o] Error 1
Compile didn't complete. No libhts.a library file found at INSTALL.pl line 881.
Can someone help me?
Thanks!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Issues installing vep
written by pmw •
-
VEP installation problem
written by jimmy0958073736 •
-
Issues with anaconda rstudio while using on a remote server
written by bioinfo456
-
Minimal example of using htslib from conda to build a simple c file?
written by Click downvote
-
Error installng bcftools-1.4
written by abdulbenissa •
-
error on installing samtools on linux cluster
written by bsmith030465
-
Issues with variant effect predictor installation
written by cookersjs •
-
CNVnator installation error
written by xiaoyonf •
-
installing miRdeep2 help!
written by c.jennifer101 •
-
DiscoSnp++ Installation Problem
written by solhan2000 •
Probably try installing with samtools and htslib added.
I've already installed both samtools and htslib
you are installing it from within a Makefile? Are you sure that you have the
ONESHELLfeature active so that your env is propagated between each subsequent Makefile command?Ensembl provides a Docker image to run VEP: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html I would go for that. VEP is so lagacy-burden and dependency-heavy that installation from scratch might be a nightmare.