multi-population vcf filtering for population genomics analysis
Hey everyone,
I'm confused about the filtering steps to apply to vcf files related to different strains of an organism.
Should I filter the vcf for MAF, missing genotypes, etc. before merging the vcf files related to the single strain? Should I perform a filtering on the single population before merging and after merging the vcf files together?
Thanks for your help
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qstefano •
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