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Relation between copy number log ratio and copy number
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written by terdon 48Consider this minimal VCF file which contains a multi-allelic call made by a somatic variant caller on a human tumor sample: ``` ##fileformat=VCFv4.3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic …
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How to merge vcf files with different variants but same samples?
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Interpretation of sex chromosome ploidy using CNVKit
written by andcl93 0I was using CNV kit for Whole Exome Sequencing data (male samples) ploidy visualization. The first time CNVkit was run without the -y option; which …
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