Hi,

I come across this error while running pindel v0.3 in docker. My bam file is named main.clean.bam and my config file has:

main.clean.bam 270 main

The error is:

I cannot find the file 'main.clean.bam'. referred to in configuration file 'calls/pindel_config.txt'. Please change the BAM configuration file.

Any idea how to sort this issue.

Thanks in advance