Is there a capsule typing tool for pseudomonas? (Like KAPTIVE for Kelbsiella)
Hi,
I have WGS data for a hundred+ pseudomonas isolates, and I want to know what capsule type they have. is there a tool for capsule typing (like KL/OCL typing in Klebsiella - KAPTIVE?) I couldn't find one online, in github or referenced in papers I've read...
Any help would be highly appreciated.
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What KAPTIVE is doing is described here: https://github.com/klebgenomics/Kaptive-Web/blob/master/README.md
Other than the visualization part you can probably do something similar for other types of features. You will need to curate a database of capsule types for Pseudomonas though.